Strain Fitness in Escherichia coli ECRC62 around BNILDI_15595

Experiment: Control_ECRC62

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_15590 and BNILDI_15595 are separated by 2 nucleotidesBNILDI_15595 and BNILDI_15600 are separated by 17 nucleotides BNILDI_15590: BNILDI_15590 - sugar ABC transporter permease, at 3,134,331 to 3,135,620 _15590 BNILDI_15595: BNILDI_15595 - maltose ABC transporter permease, at 3,135,623 to 3,136,456 _15595 BNILDI_15600: BNILDI_15600 - alpha-glycosidase, at 3,136,474 to 3,138,273 _15600 Position (kb) 3135 3136 3137Strain fitness (log2 ratio) -2 -1 0 1 2at 3135.303 kb on - strand, within BNILDI_15590at 3136.182 kb on + strand, within BNILDI_15595at 3136.183 kb on - strand, within BNILDI_15595at 3136.344 kb on - strand, within BNILDI_15595at 3136.550 kb on + strandat 3136.587 kb on + strandat 3136.588 kb on - strandat 3136.898 kb on - strand, within BNILDI_15600at 3137.420 kb on - strand, within BNILDI_15600

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
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3,135,303 - BNILDI_15590 0.75 +0.2
3,136,182 + BNILDI_15595 0.67 -0.5
3,136,183 - BNILDI_15595 0.67 +2.0
3,136,344 - BNILDI_15595 0.86 -2.0
3,136,550 + -0.3
3,136,587 + +0.1
3,136,588 - -0.1
3,136,898 - BNILDI_15600 0.24 -0.5
3,137,420 - BNILDI_15600 0.53 -0.1

Or see this region's nucleotide sequence