Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_15560 and BNILDI_15565 are separated by 406 nucleotides BNILDI_15565 and BNILDI_15570 are separated by 82 nucleotides BNILDI_15570 and BNILDI_15575 are separated by 96 nucleotides
BNILDI_15560: BNILDI_15560 - TrmB family transcriptional regulator, at 3,127,800 to 3,128,609
_15560
BNILDI_15565: BNILDI_15565 - sugar ABC transporter ATP-binding protein, at 3,129,016 to 3,130,143
_15565
BNILDI_15570: BNILDI_15570 - glycosidase, at 3,130,226 to 3,130,714
_15570
BNILDI_15575: BNILDI_15575 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 3,130,811 to 3,131,767
_15575
Position (kb)
3129
3130
3131 Strain fitness (log2 ratio)
-1
0
1
2 at 3128.404 kb on + strand, within BNILDI_15560 at 3128.435 kb on + strand, within BNILDI_15560 at 3128.523 kb on - strand, within BNILDI_15560 at 3128.523 kb on - strand, within BNILDI_15560 at 3128.609 kb on + strand at 3128.846 kb on + strand at 3129.296 kb on - strand, within BNILDI_15565 at 3129.365 kb on + strand, within BNILDI_15565 at 3129.401 kb on - strand, within BNILDI_15565 at 3129.469 kb on - strand, within BNILDI_15565 at 3129.517 kb on - strand, within BNILDI_15565 at 3129.560 kb on + strand, within BNILDI_15565 at 3129.560 kb on + strand, within BNILDI_15565 at 3130.227 kb on + strand at 3131.009 kb on - strand, within BNILDI_15575
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 3,128,404 + BNILDI_15560 0.75 -0.7 3,128,435 + BNILDI_15560 0.78 -1.7 3,128,523 - BNILDI_15560 0.89 -0.4 3,128,523 - BNILDI_15560 0.89 +0.2 3,128,609 + +0.7 3,128,846 + +1.8 3,129,296 - BNILDI_15565 0.25 -1.2 3,129,365 + BNILDI_15565 0.31 +0.2 3,129,401 - BNILDI_15565 0.34 +1.0 3,129,469 - BNILDI_15565 0.40 +0.8 3,129,517 - BNILDI_15565 0.44 -0.3 3,129,560 + BNILDI_15565 0.48 +0.8 3,129,560 + BNILDI_15565 0.48 +0.2 3,130,227 + -1.3 3,131,009 - BNILDI_15575 0.21 +0.6
Or see this region's nucleotide sequence