Strain Fitness in Escherichia coli ECRC62 around BNILDI_10110

Experiment: Control_ECRC62

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygfK and mocA are separated by 321 nucleotidesmocA and yqeC are separated by 102 nucleotidesyqeC and yqeB are separated by 47 nucleotides BNILDI_10105: ygfK - putative selenate reductase subunit YgfK, at 2,032,563 to 2,035,661 ygfK BNILDI_10110: mocA - molybdenum cofactor cytidylyltransferase, at 2,035,983 to 2,036,561 mocA BNILDI_10115: yqeC - selenium cofactor biosynthesis protein YqeC, at 2,036,664 to 2,037,434 yqeC BNILDI_10120: yqeB - selenium-dependent molybdenum cofactor biosynthesis protein YqeB, at 2,037,482 to 2,039,107 yqeB Position (kb) 2035 2036 2037Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2035.074 kb on + strand, within ygfKat 2035.154 kb on + strand, within ygfKat 2035.155 kb on - strand, within ygfKat 2035.155 kb on - strand, within ygfKat 2035.191 kb on - strand, within ygfKat 2035.217 kb on + strand, within ygfKat 2035.217 kb on + strand, within ygfKat 2035.298 kb on - strand, within ygfKat 2035.457 kb on + strandat 2035.600 kb on + strandat 2035.611 kb on + strandat 2035.612 kb on - strandat 2035.649 kb on + strandat 2035.652 kb on + strandat 2035.652 kb on + strandat 2035.652 kb on + strandat 2035.653 kb on - strandat 2035.674 kb on - strandat 2035.679 kb on - strandat 2035.679 kb on - strandat 2035.680 kb on + strandat 2035.680 kb on + strandat 2035.681 kb on - strandat 2035.681 kb on - strandat 2035.686 kb on + strandat 2035.953 kb on + strandat 2036.013 kb on - strandat 2036.013 kb on - strandat 2036.015 kb on + strandat 2036.037 kb on - strandat 2036.325 kb on + strand, within mocAat 2036.358 kb on - strand, within mocAat 2036.358 kb on - strand, within mocAat 2036.543 kb on + strandat 2036.544 kb on - strandat 2036.577 kb on + strandat 2036.704 kb on + strandat 2036.704 kb on + strandat 2036.704 kb on + strandat 2036.812 kb on + strand, within yqeCat 2036.831 kb on + strand, within yqeCat 2036.831 kb on + strand, within yqeCat 2036.831 kb on + strand, within yqeCat 2036.831 kb on + strand, within yqeCat 2036.831 kb on + strand, within yqeCat 2036.832 kb on - strand, within yqeCat 2036.832 kb on - strand, within yqeCat 2036.832 kb on - strand, within yqeCat 2036.832 kb on - strand, within yqeCat 2036.832 kb on - strand, within yqeCat 2036.832 kb on - strand, within yqeCat 2036.832 kb on - strand, within yqeCat 2036.838 kb on - strand, within yqeCat 2036.903 kb on + strand, within yqeCat 2036.903 kb on + strand, within yqeCat 2036.904 kb on - strand, within yqeCat 2036.904 kb on - strand, within yqeCat 2036.904 kb on - strand, within yqeCat 2036.904 kb on - strand, within yqeCat 2036.966 kb on + strand, within yqeCat 2036.966 kb on + strand, within yqeCat 2036.966 kb on + strand, within yqeCat 2036.967 kb on - strand, within yqeCat 2036.967 kb on - strand, within yqeCat 2037.125 kb on + strand, within yqeCat 2037.125 kb on + strand, within yqeCat 2037.125 kb on + strand, within yqeCat 2037.126 kb on - strand, within yqeCat 2037.126 kb on - strand, within yqeCat 2037.394 kb on + strandat 2037.395 kb on - strandat 2037.395 kb on - strandat 2037.482 kb on - strandat 2037.487 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
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2,035,074 + ygfK BNILDI_10105 0.81 -0.1
2,035,154 + ygfK BNILDI_10105 0.84 +1.1
2,035,155 - ygfK BNILDI_10105 0.84 +0.7
2,035,155 - ygfK BNILDI_10105 0.84 +0.3
2,035,191 - ygfK BNILDI_10105 0.85 -1.6
2,035,217 + ygfK BNILDI_10105 0.86 -0.5
2,035,217 + ygfK BNILDI_10105 0.86 -0.5
2,035,298 - ygfK BNILDI_10105 0.88 -2.1
2,035,457 + +0.1
2,035,600 + +0.2
2,035,611 + +0.2
2,035,612 - +0.1
2,035,649 + -2.5
2,035,652 + -2.1
2,035,652 + +1.1
2,035,652 + -1.0
2,035,653 - -0.2
2,035,674 - -0.0
2,035,679 - -0.0
2,035,679 - -0.6
2,035,680 + -0.1
2,035,680 + -0.3
2,035,681 - +1.0
2,035,681 - -0.3
2,035,686 + +0.2
2,035,953 + -0.7
2,036,013 - -0.8
2,036,013 - -0.9
2,036,015 + +0.2
2,036,037 - +0.2
2,036,325 + mocA BNILDI_10110 0.59 -0.6
2,036,358 - mocA BNILDI_10110 0.65 -1.9
2,036,358 - mocA BNILDI_10110 0.65 -0.2
2,036,543 + -0.5
2,036,544 - -0.1
2,036,577 + -1.0
2,036,704 + +0.7
2,036,704 + +0.2
2,036,704 + +0.1
2,036,812 + yqeC BNILDI_10115 0.19 +0.9
2,036,831 + yqeC BNILDI_10115 0.22 +1.0
2,036,831 + yqeC BNILDI_10115 0.22 +0.2
2,036,831 + yqeC BNILDI_10115 0.22 +0.5
2,036,831 + yqeC BNILDI_10115 0.22 -0.5
2,036,831 + yqeC BNILDI_10115 0.22 +0.3
2,036,832 - yqeC BNILDI_10115 0.22 -2.2
2,036,832 - yqeC BNILDI_10115 0.22 -0.8
2,036,832 - yqeC BNILDI_10115 0.22 -2.8
2,036,832 - yqeC BNILDI_10115 0.22 -0.1
2,036,832 - yqeC BNILDI_10115 0.22 +0.5
2,036,832 - yqeC BNILDI_10115 0.22 +0.4
2,036,832 - yqeC BNILDI_10115 0.22 +0.1
2,036,838 - yqeC BNILDI_10115 0.23 -1.4
2,036,903 + yqeC BNILDI_10115 0.31 -2.4
2,036,903 + yqeC BNILDI_10115 0.31 +2.0
2,036,904 - yqeC BNILDI_10115 0.31 +1.3
2,036,904 - yqeC BNILDI_10115 0.31 -0.1
2,036,904 - yqeC BNILDI_10115 0.31 -2.1
2,036,904 - yqeC BNILDI_10115 0.31 -0.4
2,036,966 + yqeC BNILDI_10115 0.39 -2.7
2,036,966 + yqeC BNILDI_10115 0.39 -2.8
2,036,966 + yqeC BNILDI_10115 0.39 -0.4
2,036,967 - yqeC BNILDI_10115 0.39 +1.1
2,036,967 - yqeC BNILDI_10115 0.39 -0.8
2,037,125 + yqeC BNILDI_10115 0.60 +0.1
2,037,125 + yqeC BNILDI_10115 0.60 -0.9
2,037,125 + yqeC BNILDI_10115 0.60 +0.4
2,037,126 - yqeC BNILDI_10115 0.60 -1.4
2,037,126 - yqeC BNILDI_10115 0.60 -0.5
2,037,394 + -0.7
2,037,395 - +1.1
2,037,395 - +0.3
2,037,482 - +1.4
2,037,487 + -0.4

Or see this region's nucleotide sequence