Strain Fitness in Escherichia coli ECRC62 around BNILDI_08870

Experiment: Control_ECRC62

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_08865 and BNILDI_08870 overlap by 4 nucleotidesBNILDI_08870 and BNILDI_08875 are separated by 124 nucleotides BNILDI_08865: BNILDI_08865 - Phage terminase large subunit, at 1,777,127 to 1,778,272 _08865 BNILDI_08870: BNILDI_08870 - hypothetical protein, at 1,778,269 to 1,778,559 _08870 BNILDI_08875: BNILDI_08875 - hypothetical protein, at 1,778,684 to 1,779,124 _08875 Position (kb) 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1777.296 kb on + strand, within BNILDI_08865at 1777.296 kb on + strand, within BNILDI_08865at 1777.316 kb on + strand, within BNILDI_08865at 1777.316 kb on + strand, within BNILDI_08865at 1777.317 kb on - strand, within BNILDI_08865at 1777.317 kb on - strand, within BNILDI_08865at 1777.332 kb on - strand, within BNILDI_08865at 1777.385 kb on - strand, within BNILDI_08865at 1777.450 kb on + strand, within BNILDI_08865at 1777.662 kb on + strand, within BNILDI_08865at 1777.662 kb on + strand, within BNILDI_08865at 1777.662 kb on + strand, within BNILDI_08865at 1777.663 kb on - strand, within BNILDI_08865at 1777.694 kb on + strand, within BNILDI_08865at 1777.694 kb on + strand, within BNILDI_08865at 1777.721 kb on - strand, within BNILDI_08865at 1777.721 kb on - strand, within BNILDI_08865at 1777.739 kb on + strand, within BNILDI_08865at 1777.739 kb on + strand, within BNILDI_08865at 1777.758 kb on + strand, within BNILDI_08865at 1777.759 kb on - strand, within BNILDI_08865at 1777.847 kb on + strand, within BNILDI_08865at 1777.847 kb on + strand, within BNILDI_08865at 1777.894 kb on + strand, within BNILDI_08865at 1777.915 kb on + strand, within BNILDI_08865at 1777.915 kb on + strand, within BNILDI_08865at 1777.915 kb on + strand, within BNILDI_08865at 1777.916 kb on - strand, within BNILDI_08865at 1778.154 kb on + strand, within BNILDI_08865at 1778.155 kb on - strand, within BNILDI_08865at 1778.402 kb on + strand, within BNILDI_08870at 1778.450 kb on + strand, within BNILDI_08870at 1778.450 kb on + strand, within BNILDI_08870at 1778.524 kb on + strand, within BNILDI_08870at 1778.557 kb on + strandat 1778.647 kb on + strandat 1778.647 kb on + strandat 1778.652 kb on + strandat 1778.698 kb on - strandat 1778.708 kb on + strandat 1778.708 kb on + strandat 1778.743 kb on + strand, within BNILDI_08875at 1778.743 kb on + strand, within BNILDI_08875at 1778.744 kb on - strand, within BNILDI_08875at 1778.751 kb on + strand, within BNILDI_08875at 1778.751 kb on + strand, within BNILDI_08875at 1778.752 kb on - strand, within BNILDI_08875at 1778.851 kb on + strand, within BNILDI_08875at 1778.852 kb on - strand, within BNILDI_08875at 1779.208 kb on + strandat 1779.208 kb on + strandat 1779.209 kb on - strandat 1779.209 kb on - strandat 1779.212 kb on + strandat 1779.212 kb on + strandat 1779.212 kb on + strandat 1779.212 kb on + strandat 1779.212 kb on + strandat 1779.212 kb on + strandat 1779.213 kb on - strandat 1779.213 kb on - strandat 1779.213 kb on - strandat 1779.213 kb on - strandat 1779.213 kb on - strandat 1779.213 kb on - strandat 1779.213 kb on - strandat 1779.214 kb on + strandat 1779.214 kb on + strandat 1779.215 kb on - strandat 1779.215 kb on - strandat 1779.263 kb on + strandat 1779.264 kb on - strandat 1779.264 kb on - strandat 1779.264 kb on - strandat 1779.264 kb on - strandat 1779.264 kb on - strandat 1779.379 kb on + strandat 1779.418 kb on + strandat 1779.418 kb on + strandat 1779.419 kb on - strandat 1779.419 kb on - strandat 1779.436 kb on - strandat 1779.458 kb on - strandat 1779.470 kb on - strandat 1779.470 kb on - strandat 1779.508 kb on + strandat 1779.508 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
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1,777,296 + BNILDI_08865 0.15 +0.0
1,777,296 + BNILDI_08865 0.15 +0.3
1,777,316 + BNILDI_08865 0.16 -0.9
1,777,316 + BNILDI_08865 0.16 +0.5
1,777,317 - BNILDI_08865 0.17 -0.1
1,777,317 - BNILDI_08865 0.17 -1.6
1,777,332 - BNILDI_08865 0.18 +0.8
1,777,385 - BNILDI_08865 0.23 -0.1
1,777,450 + BNILDI_08865 0.28 -0.3
1,777,662 + BNILDI_08865 0.47 +1.3
1,777,662 + BNILDI_08865 0.47 +0.1
1,777,662 + BNILDI_08865 0.47 +0.5
1,777,663 - BNILDI_08865 0.47 +0.2
1,777,694 + BNILDI_08865 0.49 +1.1
1,777,694 + BNILDI_08865 0.49 -0.4
1,777,721 - BNILDI_08865 0.52 +0.1
1,777,721 - BNILDI_08865 0.52 +1.0
1,777,739 + BNILDI_08865 0.53 -1.4
1,777,739 + BNILDI_08865 0.53 +0.3
1,777,758 + BNILDI_08865 0.55 +0.4
1,777,759 - BNILDI_08865 0.55 -1.3
1,777,847 + BNILDI_08865 0.63 -3.5
1,777,847 + BNILDI_08865 0.63 +0.3
1,777,894 + BNILDI_08865 0.67 -0.8
1,777,915 + BNILDI_08865 0.69 +0.8
1,777,915 + BNILDI_08865 0.69 +0.3
1,777,915 + BNILDI_08865 0.69 +2.9
1,777,916 - BNILDI_08865 0.69 -1.2
1,778,154 + BNILDI_08865 0.90 +2.2
1,778,155 - BNILDI_08865 0.90 -1.1
1,778,402 + BNILDI_08870 0.46 +0.4
1,778,450 + BNILDI_08870 0.62 -0.1
1,778,450 + BNILDI_08870 0.62 +0.8
1,778,524 + BNILDI_08870 0.88 +0.5
1,778,557 + -2.0
1,778,647 + -1.0
1,778,647 + +0.9
1,778,652 + +1.0
1,778,698 - -0.8
1,778,708 + +0.2
1,778,708 + -0.9
1,778,743 + BNILDI_08875 0.13 +2.9
1,778,743 + BNILDI_08875 0.13 +0.9
1,778,744 - BNILDI_08875 0.14 -0.3
1,778,751 + BNILDI_08875 0.15 -0.1
1,778,751 + BNILDI_08875 0.15 -0.6
1,778,752 - BNILDI_08875 0.15 -1.9
1,778,851 + BNILDI_08875 0.38 -1.7
1,778,852 - BNILDI_08875 0.38 -0.5
1,779,208 + -1.3
1,779,208 + -0.2
1,779,209 - -2.4
1,779,209 - +0.9
1,779,212 + -0.8
1,779,212 + +0.1
1,779,212 + +0.2
1,779,212 + -3.3
1,779,212 + +0.6
1,779,212 + -0.5
1,779,213 - +1.7
1,779,213 - -1.2
1,779,213 - -0.4
1,779,213 - -0.3
1,779,213 - +0.1
1,779,213 - +0.0
1,779,213 - -0.1
1,779,214 + +0.4
1,779,214 + +1.4
1,779,215 - +0.4
1,779,215 - +0.2
1,779,263 + -0.6
1,779,264 - -0.5
1,779,264 - -0.8
1,779,264 - +1.6
1,779,264 - -2.9
1,779,264 - +0.2
1,779,379 + -0.0
1,779,418 + -0.6
1,779,418 + +0.5
1,779,419 - +0.1
1,779,419 - -0.6
1,779,436 - +0.3
1,779,458 - -2.0
1,779,470 - -2.4
1,779,470 - -0.9
1,779,508 + -1.5
1,779,508 + -1.1

Or see this region's nucleotide sequence