Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_08865 and BNILDI_08870 overlap by 4 nucleotides BNILDI_08870 and BNILDI_08875 are separated by 124 nucleotides
BNILDI_08865: BNILDI_08865 - Phage terminase large subunit, at 1,777,127 to 1,778,272
_08865
BNILDI_08870: BNILDI_08870 - hypothetical protein, at 1,778,269 to 1,778,559
_08870
BNILDI_08875: BNILDI_08875 - hypothetical protein, at 1,778,684 to 1,779,124
_08875
Position (kb)
1778
1779 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1777.296 kb on + strand, within BNILDI_08865 at 1777.296 kb on + strand, within BNILDI_08865 at 1777.316 kb on + strand, within BNILDI_08865 at 1777.316 kb on + strand, within BNILDI_08865 at 1777.317 kb on - strand, within BNILDI_08865 at 1777.317 kb on - strand, within BNILDI_08865 at 1777.332 kb on - strand, within BNILDI_08865 at 1777.385 kb on - strand, within BNILDI_08865 at 1777.450 kb on + strand, within BNILDI_08865 at 1777.662 kb on + strand, within BNILDI_08865 at 1777.662 kb on + strand, within BNILDI_08865 at 1777.662 kb on + strand, within BNILDI_08865 at 1777.663 kb on - strand, within BNILDI_08865 at 1777.694 kb on + strand, within BNILDI_08865 at 1777.694 kb on + strand, within BNILDI_08865 at 1777.721 kb on - strand, within BNILDI_08865 at 1777.721 kb on - strand, within BNILDI_08865 at 1777.739 kb on + strand, within BNILDI_08865 at 1777.739 kb on + strand, within BNILDI_08865 at 1777.758 kb on + strand, within BNILDI_08865 at 1777.759 kb on - strand, within BNILDI_08865 at 1777.847 kb on + strand, within BNILDI_08865 at 1777.847 kb on + strand, within BNILDI_08865 at 1777.894 kb on + strand, within BNILDI_08865 at 1777.915 kb on + strand, within BNILDI_08865 at 1777.915 kb on + strand, within BNILDI_08865 at 1777.915 kb on + strand, within BNILDI_08865 at 1777.916 kb on - strand, within BNILDI_08865 at 1778.154 kb on + strand, within BNILDI_08865 at 1778.155 kb on - strand, within BNILDI_08865 at 1778.402 kb on + strand, within BNILDI_08870 at 1778.450 kb on + strand, within BNILDI_08870 at 1778.450 kb on + strand, within BNILDI_08870 at 1778.524 kb on + strand, within BNILDI_08870 at 1778.557 kb on + strand at 1778.647 kb on + strand at 1778.647 kb on + strand at 1778.652 kb on + strand at 1778.698 kb on - strand at 1778.708 kb on + strand at 1778.708 kb on + strand at 1778.743 kb on + strand, within BNILDI_08875 at 1778.743 kb on + strand, within BNILDI_08875 at 1778.744 kb on - strand, within BNILDI_08875 at 1778.751 kb on + strand, within BNILDI_08875 at 1778.751 kb on + strand, within BNILDI_08875 at 1778.752 kb on - strand, within BNILDI_08875 at 1778.851 kb on + strand, within BNILDI_08875 at 1778.852 kb on - strand, within BNILDI_08875 at 1779.208 kb on + strand at 1779.208 kb on + strand at 1779.209 kb on - strand at 1779.209 kb on - strand at 1779.212 kb on + strand at 1779.212 kb on + strand at 1779.212 kb on + strand at 1779.212 kb on + strand at 1779.212 kb on + strand at 1779.212 kb on + strand at 1779.213 kb on - strand at 1779.213 kb on - strand at 1779.213 kb on - strand at 1779.213 kb on - strand at 1779.213 kb on - strand at 1779.213 kb on - strand at 1779.213 kb on - strand at 1779.214 kb on + strand at 1779.214 kb on + strand at 1779.215 kb on - strand at 1779.215 kb on - strand at 1779.263 kb on + strand at 1779.264 kb on - strand at 1779.264 kb on - strand at 1779.264 kb on - strand at 1779.264 kb on - strand at 1779.264 kb on - strand at 1779.379 kb on + strand at 1779.418 kb on + strand at 1779.418 kb on + strand at 1779.419 kb on - strand at 1779.419 kb on - strand at 1779.436 kb on - strand at 1779.458 kb on - strand at 1779.470 kb on - strand at 1779.470 kb on - strand at 1779.508 kb on + strand at 1779.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 1,777,296 + BNILDI_08865 0.15 +0.0 1,777,296 + BNILDI_08865 0.15 +0.3 1,777,316 + BNILDI_08865 0.16 -0.9 1,777,316 + BNILDI_08865 0.16 +0.5 1,777,317 - BNILDI_08865 0.17 -0.1 1,777,317 - BNILDI_08865 0.17 -1.6 1,777,332 - BNILDI_08865 0.18 +0.8 1,777,385 - BNILDI_08865 0.23 -0.1 1,777,450 + BNILDI_08865 0.28 -0.3 1,777,662 + BNILDI_08865 0.47 +1.3 1,777,662 + BNILDI_08865 0.47 +0.1 1,777,662 + BNILDI_08865 0.47 +0.5 1,777,663 - BNILDI_08865 0.47 +0.2 1,777,694 + BNILDI_08865 0.49 +1.1 1,777,694 + BNILDI_08865 0.49 -0.4 1,777,721 - BNILDI_08865 0.52 +0.1 1,777,721 - BNILDI_08865 0.52 +1.0 1,777,739 + BNILDI_08865 0.53 -1.4 1,777,739 + BNILDI_08865 0.53 +0.3 1,777,758 + BNILDI_08865 0.55 +0.4 1,777,759 - BNILDI_08865 0.55 -1.3 1,777,847 + BNILDI_08865 0.63 -3.5 1,777,847 + BNILDI_08865 0.63 +0.3 1,777,894 + BNILDI_08865 0.67 -0.8 1,777,915 + BNILDI_08865 0.69 +0.8 1,777,915 + BNILDI_08865 0.69 +0.3 1,777,915 + BNILDI_08865 0.69 +2.9 1,777,916 - BNILDI_08865 0.69 -1.2 1,778,154 + BNILDI_08865 0.90 +2.2 1,778,155 - BNILDI_08865 0.90 -1.1 1,778,402 + BNILDI_08870 0.46 +0.4 1,778,450 + BNILDI_08870 0.62 -0.1 1,778,450 + BNILDI_08870 0.62 +0.8 1,778,524 + BNILDI_08870 0.88 +0.5 1,778,557 + -2.0 1,778,647 + -1.0 1,778,647 + +0.9 1,778,652 + +1.0 1,778,698 - -0.8 1,778,708 + +0.2 1,778,708 + -0.9 1,778,743 + BNILDI_08875 0.13 +2.9 1,778,743 + BNILDI_08875 0.13 +0.9 1,778,744 - BNILDI_08875 0.14 -0.3 1,778,751 + BNILDI_08875 0.15 -0.1 1,778,751 + BNILDI_08875 0.15 -0.6 1,778,752 - BNILDI_08875 0.15 -1.9 1,778,851 + BNILDI_08875 0.38 -1.7 1,778,852 - BNILDI_08875 0.38 -0.5 1,779,208 + -1.3 1,779,208 + -0.2 1,779,209 - -2.4 1,779,209 - +0.9 1,779,212 + -0.8 1,779,212 + +0.1 1,779,212 + +0.2 1,779,212 + -3.3 1,779,212 + +0.6 1,779,212 + -0.5 1,779,213 - +1.7 1,779,213 - -1.2 1,779,213 - -0.4 1,779,213 - -0.3 1,779,213 - +0.1 1,779,213 - +0.0 1,779,213 - -0.1 1,779,214 + +0.4 1,779,214 + +1.4 1,779,215 - +0.4 1,779,215 - +0.2 1,779,263 + -0.6 1,779,264 - -0.5 1,779,264 - -0.8 1,779,264 - +1.6 1,779,264 - -2.9 1,779,264 - +0.2 1,779,379 + -0.0 1,779,418 + -0.6 1,779,418 + +0.5 1,779,419 - +0.1 1,779,419 - -0.6 1,779,436 - +0.3 1,779,458 - -2.0 1,779,470 - -2.4 1,779,470 - -0.9 1,779,508 + -1.5 1,779,508 + -1.1
Or see this region's nucleotide sequence