Strain Fitness in Escherichia coli ECRC62 around BNILDI_07670

Experiment: Control_ECRC62

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfimA and fimI are separated by 106 nucleotidesfimI and fimC are separated by 36 nucleotidesfimC and fimD are separated by 66 nucleotides BNILDI_07665: fimA - Type-1 fimbrial protein, A chain precursor, at 1,532,016 to 1,532,564 fimA BNILDI_07670: fimI - Fimbrin-like protein fimI precursor, at 1,532,671 to 1,533,168 fimI BNILDI_07675: fimC - type 1 fimbria chaperone FimC, at 1,533,205 to 1,533,930 fimC BNILDI_07680: fimD - fimbrial usher FimD, at 1,533,997 to 1,536,633 fimD Position (kb) 1532 1533 1534Strain fitness (log2 ratio) -2 -1 0 1at 1531.721 kb on + strandat 1531.987 kb on + strandat 1532.120 kb on + strand, within fimAat 1532.185 kb on + strand, within fimAat 1532.493 kb on + strand, within fimAat 1532.497 kb on - strand, within fimAat 1532.528 kb on + strandat 1532.625 kb on - strandat 1532.655 kb on - strandat 1532.701 kb on - strandat 1532.722 kb on - strand, within fimIat 1532.776 kb on - strand, within fimIat 1532.878 kb on - strand, within fimIat 1532.878 kb on - strand, within fimIat 1532.878 kb on - strand, within fimIat 1532.900 kb on + strand, within fimIat 1532.901 kb on - strand, within fimIat 1533.059 kb on - strand, within fimIat 1533.161 kb on - strandat 1533.181 kb on + strandat 1533.323 kb on + strand, within fimCat 1533.324 kb on - strand, within fimCat 1533.338 kb on + strand, within fimCat 1533.506 kb on + strand, within fimCat 1533.655 kb on + strand, within fimCat 1533.754 kb on + strand, within fimCat 1533.864 kb on + strandat 1533.996 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
remove
1,531,721 + +0.0
1,531,987 + -0.3
1,532,120 + fimA BNILDI_07665 0.19 -1.1
1,532,185 + fimA BNILDI_07665 0.31 +0.3
1,532,493 + fimA BNILDI_07665 0.87 -0.8
1,532,497 - fimA BNILDI_07665 0.88 +0.2
1,532,528 + +0.2
1,532,625 - -1.4
1,532,655 - -0.7
1,532,701 - +0.6
1,532,722 - fimI BNILDI_07670 0.10 -2.0
1,532,776 - fimI BNILDI_07670 0.21 -0.7
1,532,878 - fimI BNILDI_07670 0.42 -0.9
1,532,878 - fimI BNILDI_07670 0.42 +0.1
1,532,878 - fimI BNILDI_07670 0.42 -1.9
1,532,900 + fimI BNILDI_07670 0.46 -2.5
1,532,901 - fimI BNILDI_07670 0.46 -0.3
1,533,059 - fimI BNILDI_07670 0.78 -0.7
1,533,161 - -0.2
1,533,181 + -0.5
1,533,323 + fimC BNILDI_07675 0.16 -0.3
1,533,324 - fimC BNILDI_07675 0.16 -1.1
1,533,338 + fimC BNILDI_07675 0.18 +0.8
1,533,506 + fimC BNILDI_07675 0.41 +0.8
1,533,655 + fimC BNILDI_07675 0.62 +0.0
1,533,754 + fimC BNILDI_07675 0.76 -0.8
1,533,864 + -0.3
1,533,996 - -1.7

Or see this region's nucleotide sequence