Strain Fitness in Escherichia coli ECRC62 around BNILDI_07025

Experiment: Control_ECRC62

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjfI and yjfJ are separated by 18 nucleotidesyjfJ and yjfK are separated by 50 nucleotidesyjfK and yjfL are separated by 17 nucleotidesyjfL and yjfM are separated by 9 nucleotides BNILDI_07015: yjfI - Uncharacterized protein YjfI, at 1,404,876 to 1,405,277 yjfI BNILDI_07020: yjfJ - Uncharacterized protein YjfJ, at 1,405,296 to 1,405,994 yjfJ BNILDI_07025: yjfK - Uncharacterized protein YjfK, at 1,406,045 to 1,406,704 yjfK BNILDI_07030: yjfL - UPF0719 inner membrane protein YjfL, at 1,406,722 to 1,407,120 yjfL BNILDI_07035: yjfM - Uncharacterized protein YjfM, at 1,407,130 to 1,407,768 yjfM Position (kb) 1406 1407Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1405.055 kb on + strand, within yjfIat 1405.155 kb on + strand, within yjfIat 1405.159 kb on - strand, within yjfIat 1405.217 kb on - strand, within yjfIat 1405.338 kb on - strandat 1405.468 kb on + strand, within yjfJat 1405.551 kb on - strand, within yjfJat 1405.671 kb on - strand, within yjfJat 1405.941 kb on - strandat 1405.960 kb on + strandat 1405.960 kb on + strandat 1405.960 kb on + strandat 1405.960 kb on + strandat 1405.961 kb on - strandat 1405.961 kb on - strandat 1405.961 kb on - strandat 1405.961 kb on - strandat 1405.961 kb on - strandat 1406.013 kb on + strandat 1406.013 kb on + strandat 1406.039 kb on + strandat 1406.045 kb on - strandat 1406.083 kb on + strandat 1406.083 kb on + strandat 1406.204 kb on - strand, within yjfKat 1406.262 kb on - strand, within yjfKat 1406.293 kb on + strand, within yjfKat 1406.424 kb on + strand, within yjfKat 1406.424 kb on + strand, within yjfKat 1406.493 kb on - strand, within yjfKat 1406.581 kb on + strand, within yjfKat 1406.621 kb on - strand, within yjfKat 1406.646 kb on + strandat 1406.693 kb on - strandat 1407.008 kb on - strand, within yjfLat 1407.108 kb on + strandat 1407.109 kb on - strandat 1407.118 kb on + strandat 1407.445 kb on - strand, within yjfMat 1407.445 kb on - strand, within yjfMat 1407.484 kb on + strand, within yjfMat 1407.485 kb on - strand, within yjfMat 1407.488 kb on - strand, within yjfMat 1407.579 kb on + strand, within yjfMat 1407.580 kb on - strand, within yjfM

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
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1,405,055 + yjfI BNILDI_07015 0.45 -0.5
1,405,155 + yjfI BNILDI_07015 0.69 -1.2
1,405,159 - yjfI BNILDI_07015 0.70 -0.1
1,405,217 - yjfI BNILDI_07015 0.85 -1.5
1,405,338 - +2.3
1,405,468 + yjfJ BNILDI_07020 0.25 +0.8
1,405,551 - yjfJ BNILDI_07020 0.36 +1.4
1,405,671 - yjfJ BNILDI_07020 0.54 +0.9
1,405,941 - +0.8
1,405,960 + +0.7
1,405,960 + -2.7
1,405,960 + -1.8
1,405,960 + -1.0
1,405,961 - -1.0
1,405,961 - +2.2
1,405,961 - +0.3
1,405,961 - -0.7
1,405,961 - +0.0
1,406,013 + -1.3
1,406,013 + -0.1
1,406,039 + +0.9
1,406,045 - -0.7
1,406,083 + -0.4
1,406,083 + +0.2
1,406,204 - yjfK BNILDI_07025 0.24 +1.5
1,406,262 - yjfK BNILDI_07025 0.33 -1.1
1,406,293 + yjfK BNILDI_07025 0.38 +0.9
1,406,424 + yjfK BNILDI_07025 0.57 +0.6
1,406,424 + yjfK BNILDI_07025 0.57 +0.9
1,406,493 - yjfK BNILDI_07025 0.68 -0.7
1,406,581 + yjfK BNILDI_07025 0.81 -2.2
1,406,621 - yjfK BNILDI_07025 0.87 +0.3
1,406,646 + +1.4
1,406,693 - +0.2
1,407,008 - yjfL BNILDI_07030 0.72 +1.5
1,407,108 + +0.4
1,407,109 - +0.3
1,407,118 + +0.3
1,407,445 - yjfM BNILDI_07035 0.49 -4.5
1,407,445 - yjfM BNILDI_07035 0.49 +0.6
1,407,484 + yjfM BNILDI_07035 0.55 +0.8
1,407,485 - yjfM BNILDI_07035 0.56 -1.6
1,407,488 - yjfM BNILDI_07035 0.56 +0.6
1,407,579 + yjfM BNILDI_07035 0.70 +0.1
1,407,580 - yjfM BNILDI_07035 0.70 -1.2

Or see this region's nucleotide sequence