Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfI and yjfJ are separated by 18 nucleotides yjfJ and yjfK are separated by 50 nucleotides yjfK and yjfL are separated by 17 nucleotides yjfL and yjfM are separated by 9 nucleotides
BNILDI_07015: yjfI - Uncharacterized protein YjfI, at 1,404,876 to 1,405,277
yjfI
BNILDI_07020: yjfJ - Uncharacterized protein YjfJ, at 1,405,296 to 1,405,994
yjfJ
BNILDI_07025: yjfK - Uncharacterized protein YjfK, at 1,406,045 to 1,406,704
yjfK
BNILDI_07030: yjfL - UPF0719 inner membrane protein YjfL, at 1,406,722 to 1,407,120
yjfL
BNILDI_07035: yjfM - Uncharacterized protein YjfM, at 1,407,130 to 1,407,768
yjfM
Position (kb)
1406
1407 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1405.055 kb on + strand, within yjfI at 1405.155 kb on + strand, within yjfI at 1405.159 kb on - strand, within yjfI at 1405.217 kb on - strand, within yjfI at 1405.338 kb on - strand at 1405.468 kb on + strand, within yjfJ at 1405.551 kb on - strand, within yjfJ at 1405.671 kb on - strand, within yjfJ at 1405.941 kb on - strand at 1405.960 kb on + strand at 1405.960 kb on + strand at 1405.960 kb on + strand at 1405.960 kb on + strand at 1405.961 kb on - strand at 1405.961 kb on - strand at 1405.961 kb on - strand at 1405.961 kb on - strand at 1405.961 kb on - strand at 1406.013 kb on + strand at 1406.013 kb on + strand at 1406.039 kb on + strand at 1406.045 kb on - strand at 1406.083 kb on + strand at 1406.083 kb on + strand at 1406.204 kb on - strand, within yjfK at 1406.262 kb on - strand, within yjfK at 1406.293 kb on + strand, within yjfK at 1406.424 kb on + strand, within yjfK at 1406.424 kb on + strand, within yjfK at 1406.493 kb on - strand, within yjfK at 1406.581 kb on + strand, within yjfK at 1406.621 kb on - strand, within yjfK at 1406.646 kb on + strand at 1406.693 kb on - strand at 1407.008 kb on - strand, within yjfL at 1407.108 kb on + strand at 1407.109 kb on - strand at 1407.118 kb on + strand at 1407.445 kb on - strand, within yjfM at 1407.445 kb on - strand, within yjfM at 1407.484 kb on + strand, within yjfM at 1407.485 kb on - strand, within yjfM at 1407.488 kb on - strand, within yjfM at 1407.579 kb on + strand, within yjfM at 1407.580 kb on - strand, within yjfM
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 1,405,055 + yjfI BNILDI_07015 0.45 -0.5 1,405,155 + yjfI BNILDI_07015 0.69 -1.2 1,405,159 - yjfI BNILDI_07015 0.70 -0.1 1,405,217 - yjfI BNILDI_07015 0.85 -1.5 1,405,338 - +2.3 1,405,468 + yjfJ BNILDI_07020 0.25 +0.8 1,405,551 - yjfJ BNILDI_07020 0.36 +1.4 1,405,671 - yjfJ BNILDI_07020 0.54 +0.9 1,405,941 - +0.8 1,405,960 + +0.7 1,405,960 + -2.7 1,405,960 + -1.8 1,405,960 + -1.0 1,405,961 - -1.0 1,405,961 - +2.2 1,405,961 - +0.3 1,405,961 - -0.7 1,405,961 - +0.0 1,406,013 + -1.3 1,406,013 + -0.1 1,406,039 + +0.9 1,406,045 - -0.7 1,406,083 + -0.4 1,406,083 + +0.2 1,406,204 - yjfK BNILDI_07025 0.24 +1.5 1,406,262 - yjfK BNILDI_07025 0.33 -1.1 1,406,293 + yjfK BNILDI_07025 0.38 +0.9 1,406,424 + yjfK BNILDI_07025 0.57 +0.6 1,406,424 + yjfK BNILDI_07025 0.57 +0.9 1,406,493 - yjfK BNILDI_07025 0.68 -0.7 1,406,581 + yjfK BNILDI_07025 0.81 -2.2 1,406,621 - yjfK BNILDI_07025 0.87 +0.3 1,406,646 + +1.4 1,406,693 - +0.2 1,407,008 - yjfL BNILDI_07030 0.72 +1.5 1,407,108 + +0.4 1,407,109 - +0.3 1,407,118 + +0.3 1,407,445 - yjfM BNILDI_07035 0.49 -4.5 1,407,445 - yjfM BNILDI_07035 0.49 +0.6 1,407,484 + yjfM BNILDI_07035 0.55 +0.8 1,407,485 - yjfM BNILDI_07035 0.56 -1.6 1,407,488 - yjfM BNILDI_07035 0.56 +0.6 1,407,579 + yjfM BNILDI_07035 0.70 +0.1 1,407,580 - yjfM BNILDI_07035 0.70 -1.2
Or see this region's nucleotide sequence