Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt corA and BNILDI_05010 are separated by 53 nucleotides BNILDI_05010 and BNILDI_05015 overlap by 4 nucleotides BNILDI_05015 and BNILDI_05020 are separated by 960 nucleotides
BNILDI_05005: corA - magnesium/cobalt transporter CorA, at 991,789 to 992,739
corA
BNILDI_05010: BNILDI_05010 - DUF943 domain-containing protein, at 992,793 to 993,272
_05010
BNILDI_05015: BNILDI_05015 - DUF3289 domain-containing protein, at 993,269 to 994,117
_05015
BNILDI_05020: BNILDI_05020 - Membrane protein, at 995,078 to 995,377
_05020
Position (kb) 993
994
995 Strain fitness (log2 ratio) -2
-1
0
1 at 992.274 kb on + strand, within corA at 992.299 kb on + strand, within corA at 992.583 kb on - strand, within corA at 992.682 kb on + strand at 992.977 kb on + strand, within BNILDI_05010 at 993.034 kb on + strand, within BNILDI_05010 at 993.034 kb on + strand, within BNILDI_05010 at 993.175 kb on + strand, within BNILDI_05010 at 993.179 kb on + strand, within BNILDI_05010 at 994.024 kb on - strand, within BNILDI_05015 at 994.418 kb on + strand at 994.429 kb on + strand at 994.453 kb on - strand at 994.454 kb on + strand at 994.477 kb on - strand at 994.967 kb on + strand at 995.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 992,274 + corA BNILDI_05005 0.51 -2.4 992,299 + corA BNILDI_05005 0.54 -0.1 992,583 - corA BNILDI_05005 0.83 -0.4 992,682 + -0.9 992,977 + BNILDI_05010 0.38 +1.0 993,034 + BNILDI_05010 0.50 +0.4 993,034 + BNILDI_05010 0.50 +0.3 993,175 + BNILDI_05010 0.80 +0.2 993,179 + BNILDI_05010 0.80 -0.2 994,024 - BNILDI_05015 0.89 +0.3 994,418 + -1.0 994,429 + +0.0 994,453 - -0.1 994,454 + +0.8 994,477 - -2.1 994,967 + -0.3 995,076 - -1.6
Or see this region's nucleotide sequence