Strain Fitness in Escherichia coli ECRC62 around BNILDI_04595

Experiment: Control_ECRC62

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpE and atpB are separated by 46 nucleotidesatpB and atpI are separated by 8 nucleotidesatpI and rsmG are separated by 616 nucleotides BNILDI_04585: atpE - F0F1 ATP synthase subunit C, at 907,928 to 908,167 atpE BNILDI_04590: atpB - F0F1 ATP synthase subunit A, at 908,214 to 909,029 atpB BNILDI_04595: atpI - F0F1 ATP synthase subunit I, at 909,038 to 909,418 atpI BNILDI_04600: rsmG - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 910,035 to 910,682 rsmG Position (kb) 909 910Strain fitness (log2 ratio) -2 -1 0 1at 908.202 kb on - strandat 908.211 kb on - strandat 909.057 kb on - strandat 909.227 kb on - strand, within atpIat 909.227 kb on - strand, within atpIat 909.363 kb on - strand, within atpIat 909.465 kb on - strandat 909.569 kb on + strandat 909.569 kb on + strandat 909.635 kb on - strandat 909.639 kb on - strandat 909.679 kb on + strandat 909.680 kb on - strandat 909.704 kb on - strandat 909.707 kb on + strandat 909.707 kb on + strandat 909.739 kb on + strandat 909.889 kb on - strandat 909.918 kb on - strandat 909.964 kb on + strandat 909.964 kb on + strandat 909.965 kb on - strandat 909.965 kb on - strandat 909.965 kb on - strandat 909.965 kb on - strandat 909.966 kb on + strandat 909.966 kb on + strandat 910.252 kb on - strand, within rsmGat 910.252 kb on - strand, within rsmGat 910.252 kb on - strand, within rsmGat 910.287 kb on + strand, within rsmGat 910.311 kb on - strand, within rsmGat 910.323 kb on - strand, within rsmGat 910.406 kb on + strand, within rsmG

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
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908,202 - +1.4
908,211 - +1.0
909,057 - -0.1
909,227 - atpI BNILDI_04595 0.50 -0.5
909,227 - atpI BNILDI_04595 0.50 -1.0
909,363 - atpI BNILDI_04595 0.85 +0.0
909,465 - +0.9
909,569 + -0.1
909,569 + +0.1
909,635 - -1.0
909,639 - -0.8
909,679 + +0.8
909,680 - -0.5
909,704 - -0.4
909,707 + +0.5
909,707 + -1.3
909,739 + +1.4
909,889 - -0.8
909,918 - +0.4
909,964 + +0.7
909,964 + -0.4
909,965 - +0.5
909,965 - -0.2
909,965 - +0.2
909,965 - -0.3
909,966 + -0.7
909,966 + -0.2
910,252 - rsmG BNILDI_04600 0.33 -0.7
910,252 - rsmG BNILDI_04600 0.33 -0.7
910,252 - rsmG BNILDI_04600 0.33 -2.4
910,287 + rsmG BNILDI_04600 0.39 +0.1
910,311 - rsmG BNILDI_04600 0.43 -0.8
910,323 - rsmG BNILDI_04600 0.44 -0.2
910,406 + rsmG BNILDI_04600 0.57 -0.1

Or see this region's nucleotide sequence