Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pstS and BNILDI_04520 are separated by 247 nucleotides BNILDI_04520 and fimD are separated by 10 nucleotides
BNILDI_04515: pstS - phosphate ABC transporter substrate-binding protein PstS, at 892,247 to 893,287
pstS
BNILDI_04520: BNILDI_04520 - fimbrial protein, at 893,535 to 894,608
_04520
BNILDI_04525: fimD - fimbrial protein, at 894,619 to 897,141
fimD
Position (kb) 893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 892.716 kb on - strand, within pstS at 892.815 kb on - strand, within pstS at 892.903 kb on - strand, within pstS at 892.903 kb on - strand, within pstS at 893.069 kb on - strand, within pstS at 893.072 kb on - strand, within pstS at 893.082 kb on - strand, within pstS at 893.116 kb on - strand, within pstS at 893.288 kb on - strand at 893.310 kb on - strand at 893.364 kb on + strand at 893.365 kb on - strand at 893.365 kb on - strand at 893.365 kb on - strand at 893.369 kb on - strand at 893.473 kb on + strand at 893.473 kb on + strand at 893.533 kb on + strand at 893.533 kb on + strand at 893.534 kb on - strand at 893.631 kb on + strand at 893.632 kb on - strand at 893.653 kb on + strand, within BNILDI_04520 at 893.653 kb on + strand, within BNILDI_04520 at 893.654 kb on - strand, within BNILDI_04520 at 893.757 kb on + strand, within BNILDI_04520 at 893.804 kb on + strand, within BNILDI_04520 at 893.805 kb on - strand, within BNILDI_04520 at 893.805 kb on - strand, within BNILDI_04520 at 894.252 kb on + strand, within BNILDI_04520 at 894.252 kb on + strand, within BNILDI_04520 at 894.254 kb on + strand, within BNILDI_04520 at 894.348 kb on - strand, within BNILDI_04520 at 894.533 kb on + strand at 894.534 kb on - strand at 894.550 kb on - strand at 894.554 kb on + strand at 894.598 kb on + strand at 894.620 kb on + strand at 894.621 kb on - strand at 894.726 kb on + strand at 894.727 kb on - strand at 894.758 kb on + strand at 894.856 kb on + strand at 894.856 kb on + strand at 894.946 kb on - strand, within fimD at 894.949 kb on - strand, within fimD at 894.959 kb on - strand, within fimD at 894.977 kb on + strand, within fimD at 894.978 kb on - strand, within fimD at 894.978 kb on - strand, within fimD at 895.069 kb on - strand, within fimD at 895.071 kb on + strand, within fimD at 895.076 kb on - strand, within fimD at 895.076 kb on - strand, within fimD at 895.116 kb on + strand, within fimD at 895.117 kb on - strand, within fimD at 895.117 kb on - strand, within fimD at 895.117 kb on - strand, within fimD at 895.126 kb on + strand, within fimD at 895.127 kb on - strand, within fimD at 895.138 kb on + strand, within fimD at 895.139 kb on - strand, within fimD at 895.139 kb on - strand, within fimD at 895.185 kb on - strand, within fimD at 895.211 kb on + strand, within fimD at 895.211 kb on + strand, within fimD at 895.212 kb on - strand, within fimD at 895.218 kb on - strand, within fimD at 895.238 kb on + strand, within fimD at 895.250 kb on + strand, within fimD at 895.250 kb on + strand, within fimD at 895.251 kb on - strand, within fimD at 895.263 kb on + strand, within fimD at 895.263 kb on + strand, within fimD at 895.263 kb on + strand, within fimD at 895.264 kb on - strand, within fimD at 895.264 kb on - strand, within fimD at 895.264 kb on - strand, within fimD at 895.295 kb on + strand, within fimD at 895.296 kb on - strand, within fimD at 895.296 kb on - strand, within fimD at 895.296 kb on - strand, within fimD at 895.307 kb on - strand, within fimD at 895.397 kb on + strand, within fimD at 895.397 kb on + strand, within fimD at 895.398 kb on - strand, within fimD at 895.398 kb on - strand, within fimD at 895.410 kb on + strand, within fimD at 895.410 kb on + strand, within fimD at 895.411 kb on - strand, within fimD at 895.441 kb on + strand, within fimD at 895.454 kb on + strand, within fimD at 895.455 kb on - strand, within fimD at 895.520 kb on + strand, within fimD at 895.521 kb on - strand, within fimD at 895.599 kb on + strand, within fimD at 895.599 kb on + strand, within fimD
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 892,716 - pstS BNILDI_04515 0.45 -3.3 892,815 - pstS BNILDI_04515 0.55 -1.1 892,903 - pstS BNILDI_04515 0.63 -1.4 892,903 - pstS BNILDI_04515 0.63 +0.5 893,069 - pstS BNILDI_04515 0.79 -0.7 893,072 - pstS BNILDI_04515 0.79 +0.6 893,082 - pstS BNILDI_04515 0.80 -0.9 893,116 - pstS BNILDI_04515 0.83 -1.3 893,288 - -0.1 893,310 - -1.8 893,364 + -1.0 893,365 - -0.6 893,365 - -0.2 893,365 - +0.3 893,369 - -0.4 893,473 + -1.9 893,473 + -0.7 893,533 + +0.1 893,533 + -1.1 893,534 - -0.4 893,631 + +0.1 893,632 - -1.9 893,653 + BNILDI_04520 0.11 +1.6 893,653 + BNILDI_04520 0.11 +0.9 893,654 - BNILDI_04520 0.11 -1.5 893,757 + BNILDI_04520 0.21 +0.3 893,804 + BNILDI_04520 0.25 -1.6 893,805 - BNILDI_04520 0.25 +0.5 893,805 - BNILDI_04520 0.25 +0.7 894,252 + BNILDI_04520 0.67 +0.6 894,252 + BNILDI_04520 0.67 +1.1 894,254 + BNILDI_04520 0.67 -0.8 894,348 - BNILDI_04520 0.76 -0.1 894,533 + -2.6 894,534 - -1.8 894,550 - -0.2 894,554 + +1.2 894,598 + +1.2 894,620 + +0.4 894,621 - +3.4 894,726 + -1.4 894,727 - -0.0 894,758 + -0.8 894,856 + +0.4 894,856 + +0.1 894,946 - fimD BNILDI_04525 0.13 -0.8 894,949 - fimD BNILDI_04525 0.13 -0.2 894,959 - fimD BNILDI_04525 0.13 -0.3 894,977 + fimD BNILDI_04525 0.14 -0.1 894,978 - fimD BNILDI_04525 0.14 +0.7 894,978 - fimD BNILDI_04525 0.14 +0.0 895,069 - fimD BNILDI_04525 0.18 +0.9 895,071 + fimD BNILDI_04525 0.18 +2.4 895,076 - fimD BNILDI_04525 0.18 +0.1 895,076 - fimD BNILDI_04525 0.18 +0.6 895,116 + fimD BNILDI_04525 0.20 -0.3 895,117 - fimD BNILDI_04525 0.20 +0.2 895,117 - fimD BNILDI_04525 0.20 -1.6 895,117 - fimD BNILDI_04525 0.20 -0.7 895,126 + fimD BNILDI_04525 0.20 -0.2 895,127 - fimD BNILDI_04525 0.20 -0.9 895,138 + fimD BNILDI_04525 0.21 -2.0 895,139 - fimD BNILDI_04525 0.21 -1.8 895,139 - fimD BNILDI_04525 0.21 +0.9 895,185 - fimD BNILDI_04525 0.22 -0.1 895,211 + fimD BNILDI_04525 0.23 -0.1 895,211 + fimD BNILDI_04525 0.23 +2.0 895,212 - fimD BNILDI_04525 0.24 +1.5 895,218 - fimD BNILDI_04525 0.24 +0.4 895,238 + fimD BNILDI_04525 0.25 +0.2 895,250 + fimD BNILDI_04525 0.25 +0.7 895,250 + fimD BNILDI_04525 0.25 -2.3 895,251 - fimD BNILDI_04525 0.25 -1.0 895,263 + fimD BNILDI_04525 0.26 +0.1 895,263 + fimD BNILDI_04525 0.26 +0.8 895,263 + fimD BNILDI_04525 0.26 -2.3 895,264 - fimD BNILDI_04525 0.26 -0.4 895,264 - fimD BNILDI_04525 0.26 -0.3 895,264 - fimD BNILDI_04525 0.26 +0.2 895,295 + fimD BNILDI_04525 0.27 -1.4 895,296 - fimD BNILDI_04525 0.27 -1.1 895,296 - fimD BNILDI_04525 0.27 -0.6 895,296 - fimD BNILDI_04525 0.27 +0.0 895,307 - fimD BNILDI_04525 0.27 -0.5 895,397 + fimD BNILDI_04525 0.31 -2.5 895,397 + fimD BNILDI_04525 0.31 +0.5 895,398 - fimD BNILDI_04525 0.31 +0.2 895,398 - fimD BNILDI_04525 0.31 -0.1 895,410 + fimD BNILDI_04525 0.31 +0.5 895,410 + fimD BNILDI_04525 0.31 -1.3 895,411 - fimD BNILDI_04525 0.31 +0.6 895,441 + fimD BNILDI_04525 0.33 -1.6 895,454 + fimD BNILDI_04525 0.33 +1.1 895,455 - fimD BNILDI_04525 0.33 +0.3 895,520 + fimD BNILDI_04525 0.36 -0.0 895,521 - fimD BNILDI_04525 0.36 +0.3 895,599 + fimD BNILDI_04525 0.39 +0.1 895,599 + fimD BNILDI_04525 0.39 -0.4
Or see this region's nucleotide sequence