Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recG and BNILDI_04095 overlap by 16 nucleotides BNILDI_04095 and gltS are separated by 2 nucleotides gltS and xanP are separated by 279 nucleotides
BNILDI_04090: recG - ATP-dependent DNA helicase RecG, at 806,865 to 808,946
recG
BNILDI_04095: BNILDI_04095 - Ybl159, at 808,931 to 809,797
_04095
BNILDI_04100: gltS - sodium/glutamate symporter, at 809,800 to 811,005
gltS
BNILDI_04105: xanP - xanthine/proton symporter XanP, at 811,285 to 812,676
xanP
Position (kb) 809
810
811
812 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 809.115 kb on - strand, within BNILDI_04095 at 809.232 kb on - strand, within BNILDI_04095 at 809.232 kb on - strand, within BNILDI_04095 at 809.232 kb on - strand, within BNILDI_04095 at 809.232 kb on - strand, within BNILDI_04095 at 809.244 kb on + strand, within BNILDI_04095 at 809.245 kb on - strand, within BNILDI_04095 at 809.336 kb on - strand, within BNILDI_04095 at 809.389 kb on + strand, within BNILDI_04095 at 809.514 kb on + strand, within BNILDI_04095 at 809.582 kb on + strand, within BNILDI_04095 at 809.582 kb on + strand, within BNILDI_04095 at 809.582 kb on + strand, within BNILDI_04095 at 809.602 kb on - strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.620 kb on - strand, within BNILDI_04095 at 809.620 kb on - strand, within BNILDI_04095 at 809.620 kb on - strand, within BNILDI_04095 at 809.622 kb on + strand, within BNILDI_04095 at 809.622 kb on + strand, within BNILDI_04095 at 809.623 kb on - strand, within BNILDI_04095 at 809.766 kb on - strand at 809.824 kb on + strand at 809.824 kb on + strand at 809.824 kb on + strand at 809.825 kb on - strand at 809.825 kb on - strand at 809.828 kb on + strand at 809.829 kb on - strand at 809.836 kb on - strand at 809.836 kb on - strand at 810.008 kb on + strand, within gltS at 810.047 kb on + strand, within gltS at 810.048 kb on - strand, within gltS at 810.163 kb on + strand, within gltS at 810.164 kb on - strand, within gltS at 810.164 kb on - strand, within gltS at 810.164 kb on - strand, within gltS at 810.164 kb on - strand, within gltS at 810.164 kb on - strand, within gltS at 810.203 kb on + strand, within gltS at 810.254 kb on - strand, within gltS at 810.331 kb on - strand, within gltS at 810.551 kb on + strand, within gltS at 810.571 kb on - strand, within gltS at 810.612 kb on + strand, within gltS at 810.613 kb on - strand, within gltS at 810.613 kb on - strand, within gltS at 810.613 kb on - strand, within gltS at 810.816 kb on + strand, within gltS at 810.854 kb on - strand, within gltS at 810.857 kb on - strand, within gltS at 810.857 kb on - strand, within gltS at 810.857 kb on - strand, within gltS at 810.908 kb on + strand at 810.908 kb on + strand at 810.909 kb on - strand at 810.942 kb on + strand at 810.942 kb on + strand at 810.943 kb on - strand at 810.943 kb on - strand at 811.005 kb on + strand at 811.009 kb on + strand at 811.010 kb on - strand at 811.010 kb on - strand at 811.039 kb on - strand at 811.048 kb on - strand at 811.078 kb on + strand at 811.078 kb on + strand at 811.078 kb on + strand at 811.078 kb on + strand at 811.078 kb on + strand at 811.078 kb on + strand at 811.198 kb on - strand at 811.249 kb on + strand at 811.452 kb on - strand, within xanP at 811.452 kb on - strand, within xanP at 811.497 kb on + strand, within xanP at 811.497 kb on + strand, within xanP at 811.497 kb on + strand, within xanP at 811.498 kb on - strand, within xanP at 811.500 kb on + strand, within xanP at 811.500 kb on + strand, within xanP at 811.500 kb on + strand, within xanP at 811.500 kb on + strand, within xanP at 811.500 kb on + strand, within xanP at 811.503 kb on + strand, within xanP at 811.503 kb on + strand, within xanP at 811.503 kb on + strand, within xanP at 811.503 kb on + strand, within xanP at 811.503 kb on + strand, within xanP at 811.504 kb on - strand, within xanP at 811.504 kb on - strand, within xanP at 811.504 kb on - strand, within xanP at 811.537 kb on - strand, within xanP at 811.581 kb on + strand, within xanP at 811.662 kb on + strand, within xanP at 811.663 kb on - strand, within xanP at 811.663 kb on - strand, within xanP at 811.663 kb on - strand, within xanP at 811.663 kb on - strand, within xanP at 811.755 kb on + strand, within xanP at 811.755 kb on + strand, within xanP at 811.755 kb on + strand, within xanP at 811.901 kb on + strand, within xanP at 811.908 kb on - strand, within xanP at 811.908 kb on - strand, within xanP at 811.911 kb on + strand, within xanP at 811.911 kb on + strand, within xanP at 811.911 kb on + strand, within xanP at 811.912 kb on - strand, within xanP at 811.932 kb on + strand, within xanP at 811.933 kb on - strand, within xanP at 811.940 kb on - strand, within xanP at 811.943 kb on + strand, within xanP at 811.944 kb on - strand, within xanP at 811.998 kb on + strand, within xanP
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 809,115 - BNILDI_04095 0.21 -1.1 809,232 - BNILDI_04095 0.35 -0.0 809,232 - BNILDI_04095 0.35 +0.8 809,232 - BNILDI_04095 0.35 +0.4 809,232 - BNILDI_04095 0.35 +0.9 809,244 + BNILDI_04095 0.36 +0.3 809,245 - BNILDI_04095 0.36 +0.3 809,336 - BNILDI_04095 0.47 +1.3 809,389 + BNILDI_04095 0.53 -1.0 809,514 + BNILDI_04095 0.67 -0.0 809,582 + BNILDI_04095 0.75 +2.2 809,582 + BNILDI_04095 0.75 -0.6 809,582 + BNILDI_04095 0.75 +0.2 809,602 - BNILDI_04095 0.77 -1.2 809,619 + BNILDI_04095 0.79 +1.5 809,619 + BNILDI_04095 0.79 +1.2 809,619 + BNILDI_04095 0.79 -0.4 809,619 + BNILDI_04095 0.79 -1.7 809,619 + BNILDI_04095 0.79 +0.5 809,619 + BNILDI_04095 0.79 -1.5 809,620 - BNILDI_04095 0.79 +3.5 809,620 - BNILDI_04095 0.79 -1.0 809,620 - BNILDI_04095 0.79 -0.6 809,622 + BNILDI_04095 0.80 -0.5 809,622 + BNILDI_04095 0.80 -0.3 809,623 - BNILDI_04095 0.80 -0.0 809,766 - +0.8 809,824 + -0.4 809,824 + +1.6 809,824 + +0.6 809,825 - -0.4 809,825 - -0.4 809,828 + -0.3 809,829 - -0.8 809,836 - +0.8 809,836 - -1.5 810,008 + gltS BNILDI_04100 0.17 -0.9 810,047 + gltS BNILDI_04100 0.20 -0.0 810,048 - gltS BNILDI_04100 0.21 +0.9 810,163 + gltS BNILDI_04100 0.30 +0.0 810,164 - gltS BNILDI_04100 0.30 -1.0 810,164 - gltS BNILDI_04100 0.30 -0.2 810,164 - gltS BNILDI_04100 0.30 -1.0 810,164 - gltS BNILDI_04100 0.30 -0.2 810,164 - gltS BNILDI_04100 0.30 +1.0 810,203 + gltS BNILDI_04100 0.33 +0.6 810,254 - gltS BNILDI_04100 0.38 +0.1 810,331 - gltS BNILDI_04100 0.44 +0.3 810,551 + gltS BNILDI_04100 0.62 +0.0 810,571 - gltS BNILDI_04100 0.64 +1.0 810,612 + gltS BNILDI_04100 0.67 -2.5 810,613 - gltS BNILDI_04100 0.67 -0.3 810,613 - gltS BNILDI_04100 0.67 +0.0 810,613 - gltS BNILDI_04100 0.67 -0.4 810,816 + gltS BNILDI_04100 0.84 -0.2 810,854 - gltS BNILDI_04100 0.87 +0.7 810,857 - gltS BNILDI_04100 0.88 +0.6 810,857 - gltS BNILDI_04100 0.88 +0.6 810,857 - gltS BNILDI_04100 0.88 -1.1 810,908 + -0.0 810,908 + +0.1 810,909 - -0.7 810,942 + +0.7 810,942 + -1.5 810,943 - +0.6 810,943 - +0.4 811,005 + +0.1 811,009 + -0.8 811,010 - +0.2 811,010 - +0.8 811,039 - +0.9 811,048 - +0.9 811,078 + -0.6 811,078 + -1.3 811,078 + -0.9 811,078 + -2.4 811,078 + +1.1 811,078 + +0.0 811,198 - -1.5 811,249 + +1.0 811,452 - xanP BNILDI_04105 0.12 -0.6 811,452 - xanP BNILDI_04105 0.12 +0.9 811,497 + xanP BNILDI_04105 0.15 +0.5 811,497 + xanP BNILDI_04105 0.15 +0.6 811,497 + xanP BNILDI_04105 0.15 -0.5 811,498 - xanP BNILDI_04105 0.15 -1.2 811,500 + xanP BNILDI_04105 0.15 +0.2 811,500 + xanP BNILDI_04105 0.15 +0.2 811,500 + xanP BNILDI_04105 0.15 -0.2 811,500 + xanP BNILDI_04105 0.15 -0.3 811,500 + xanP BNILDI_04105 0.15 +0.1 811,503 + xanP BNILDI_04105 0.16 -0.3 811,503 + xanP BNILDI_04105 0.16 +0.9 811,503 + xanP BNILDI_04105 0.16 +1.0 811,503 + xanP BNILDI_04105 0.16 -0.4 811,503 + xanP BNILDI_04105 0.16 +0.4 811,504 - xanP BNILDI_04105 0.16 +1.3 811,504 - xanP BNILDI_04105 0.16 -2.4 811,504 - xanP BNILDI_04105 0.16 -0.9 811,537 - xanP BNILDI_04105 0.18 -0.0 811,581 + xanP BNILDI_04105 0.21 +1.2 811,662 + xanP BNILDI_04105 0.27 -0.4 811,663 - xanP BNILDI_04105 0.27 +0.1 811,663 - xanP BNILDI_04105 0.27 +0.9 811,663 - xanP BNILDI_04105 0.27 -1.1 811,663 - xanP BNILDI_04105 0.27 +0.7 811,755 + xanP BNILDI_04105 0.34 -1.6 811,755 + xanP BNILDI_04105 0.34 +1.0 811,755 + xanP BNILDI_04105 0.34 +2.3 811,901 + xanP BNILDI_04105 0.44 -0.5 811,908 - xanP BNILDI_04105 0.45 +1.4 811,908 - xanP BNILDI_04105 0.45 -0.1 811,911 + xanP BNILDI_04105 0.45 +0.9 811,911 + xanP BNILDI_04105 0.45 -1.0 811,911 + xanP BNILDI_04105 0.45 -1.7 811,912 - xanP BNILDI_04105 0.45 -0.4 811,932 + xanP BNILDI_04105 0.46 -0.2 811,933 - xanP BNILDI_04105 0.47 +0.4 811,940 - xanP BNILDI_04105 0.47 +0.7 811,943 + xanP BNILDI_04105 0.47 +2.4 811,944 - xanP BNILDI_04105 0.47 +0.4 811,998 + xanP BNILDI_04105 0.51 +0.4
Or see this region's nucleotide sequence