Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uspA and dtpB are separated by 317 nucleotides dtpB and rsmJ are separated by 48 nucleotides rsmJ and prlC are separated by 7 nucleotides
BNILDI_03195: uspA - universal stress protein UspA, at 619,705 to 620,139
uspA
BNILDI_03200: dtpB - dipeptide/tripeptide permease DtpB, at 620,457 to 621,926
dtpB
BNILDI_03205: rsmJ - 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ, at 621,975 to 622,727
rsmJ
BNILDI_03210: prlC - oligopeptidase A, at 622,735 to 624,777
prlC
Position (kb) 620
621
622 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 619.496 kb on + strand at 619.496 kb on + strand at 619.497 kb on - strand at 619.498 kb on + strand at 619.498 kb on + strand at 619.498 kb on + strand at 619.499 kb on - strand at 619.565 kb on - strand at 619.566 kb on + strand at 619.567 kb on - strand at 619.567 kb on - strand at 619.622 kb on + strand at 619.623 kb on - strand at 619.663 kb on + strand at 619.704 kb on + strand at 619.704 kb on + strand at 619.711 kb on + strand at 619.712 kb on - strand at 619.713 kb on + strand at 619.820 kb on + strand, within uspA at 619.820 kb on + strand, within uspA at 619.826 kb on + strand, within uspA at 619.826 kb on + strand, within uspA at 619.827 kb on - strand, within uspA at 619.831 kb on + strand, within uspA at 619.841 kb on + strand, within uspA at 619.841 kb on + strand, within uspA at 619.842 kb on - strand, within uspA at 619.844 kb on - strand, within uspA at 619.876 kb on - strand, within uspA at 619.876 kb on - strand, within uspA at 620.008 kb on + strand, within uspA at 620.060 kb on + strand, within uspA at 620.060 kb on + strand, within uspA at 620.060 kb on + strand, within uspA at 620.060 kb on + strand, within uspA at 620.061 kb on - strand, within uspA at 620.061 kb on - strand, within uspA at 620.103 kb on + strand at 620.137 kb on + strand at 620.138 kb on - strand at 620.138 kb on - strand at 620.138 kb on - strand at 620.222 kb on - strand at 620.231 kb on - strand at 620.250 kb on + strand at 620.308 kb on - strand at 620.336 kb on + strand at 620.336 kb on + strand at 620.344 kb on + strand at 620.367 kb on + strand at 620.367 kb on + strand at 620.368 kb on - strand at 620.389 kb on + strand at 620.423 kb on + strand at 620.452 kb on + strand at 620.452 kb on + strand at 620.453 kb on - strand at 620.456 kb on + strand at 620.456 kb on + strand at 620.457 kb on - strand at 620.457 kb on - strand at 620.457 kb on - strand at 620.462 kb on + strand at 620.463 kb on - strand at 620.544 kb on + strand at 620.545 kb on - strand at 620.647 kb on - strand, within dtpB at 620.761 kb on + strand, within dtpB at 620.761 kb on + strand, within dtpB at 620.762 kb on - strand, within dtpB at 620.762 kb on - strand, within dtpB at 620.766 kb on - strand, within dtpB at 620.766 kb on - strand, within dtpB at 620.766 kb on - strand, within dtpB at 620.822 kb on + strand, within dtpB at 620.901 kb on + strand, within dtpB at 620.901 kb on + strand, within dtpB at 620.901 kb on + strand, within dtpB at 620.901 kb on + strand, within dtpB at 620.901 kb on + strand, within dtpB at 620.901 kb on + strand, within dtpB at 620.901 kb on + strand, within dtpB at 620.902 kb on - strand, within dtpB at 620.902 kb on - strand, within dtpB at 620.904 kb on - strand, within dtpB at 620.960 kb on + strand, within dtpB at 620.982 kb on + strand, within dtpB at 620.982 kb on + strand, within dtpB at 620.982 kb on + strand, within dtpB at 620.982 kb on + strand, within dtpB at 621.008 kb on + strand, within dtpB at 621.102 kb on + strand, within dtpB at 621.102 kb on + strand, within dtpB at 621.102 kb on + strand, within dtpB at 621.102 kb on + strand, within dtpB at 621.102 kb on + strand, within dtpB at 621.102 kb on + strand, within dtpB at 621.102 kb on + strand, within dtpB at 621.103 kb on - strand, within dtpB at 621.103 kb on - strand, within dtpB at 621.109 kb on + strand, within dtpB at 621.109 kb on + strand, within dtpB at 621.110 kb on - strand, within dtpB at 621.160 kb on + strand, within dtpB at 621.161 kb on - strand, within dtpB at 621.255 kb on - strand, within dtpB at 621.301 kb on - strand, within dtpB at 621.453 kb on + strand, within dtpB at 621.453 kb on + strand, within dtpB at 621.518 kb on + strand, within dtpB at 621.518 kb on + strand, within dtpB at 621.518 kb on + strand, within dtpB at 621.518 kb on + strand, within dtpB at 621.518 kb on + strand, within dtpB at 621.518 kb on + strand, within dtpB at 621.612 kb on + strand, within dtpB at 621.612 kb on + strand, within dtpB at 621.612 kb on + strand, within dtpB at 621.612 kb on + strand, within dtpB at 621.644 kb on + strand, within dtpB at 621.645 kb on - strand, within dtpB at 621.754 kb on - strand, within dtpB at 621.816 kb on + strand at 621.816 kb on + strand at 621.817 kb on - strand at 621.834 kb on - strand at 621.866 kb on - strand at 621.924 kb on + strand at 621.928 kb on + strand at 621.977 kb on - strand at 622.007 kb on + strand at 622.007 kb on + strand at 622.008 kb on - strand at 622.077 kb on + strand, within rsmJ at 622.078 kb on - strand, within rsmJ at 622.119 kb on + strand, within rsmJ at 622.120 kb on - strand, within rsmJ at 622.281 kb on + strand, within rsmJ at 622.281 kb on + strand, within rsmJ at 622.282 kb on - strand, within rsmJ at 622.681 kb on - strand at 622.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 619,496 + -1.3 619,496 + -3.3 619,497 - +0.2 619,498 + +0.4 619,498 + -1.8 619,498 + -1.9 619,499 - +0.1 619,565 - -2.7 619,566 + +1.0 619,567 - +0.7 619,567 - -0.3 619,622 + +1.2 619,623 - +0.8 619,663 + +0.3 619,704 + -1.3 619,704 + +1.1 619,711 + -1.0 619,712 - +0.0 619,713 + -0.3 619,820 + uspA BNILDI_03195 0.26 -1.1 619,820 + uspA BNILDI_03195 0.26 +0.6 619,826 + uspA BNILDI_03195 0.28 +0.1 619,826 + uspA BNILDI_03195 0.28 -1.8 619,827 - uspA BNILDI_03195 0.28 -0.2 619,831 + uspA BNILDI_03195 0.29 +0.6 619,841 + uspA BNILDI_03195 0.31 +0.8 619,841 + uspA BNILDI_03195 0.31 -1.8 619,842 - uspA BNILDI_03195 0.31 -2.3 619,844 - uspA BNILDI_03195 0.32 -1.3 619,876 - uspA BNILDI_03195 0.39 +0.0 619,876 - uspA BNILDI_03195 0.39 -0.4 620,008 + uspA BNILDI_03195 0.70 -0.5 620,060 + uspA BNILDI_03195 0.82 -2.2 620,060 + uspA BNILDI_03195 0.82 +0.4 620,060 + uspA BNILDI_03195 0.82 -0.1 620,060 + uspA BNILDI_03195 0.82 +0.1 620,061 - uspA BNILDI_03195 0.82 +1.9 620,061 - uspA BNILDI_03195 0.82 +0.3 620,103 + +2.7 620,137 + +0.5 620,138 - -3.2 620,138 - +1.1 620,138 - +1.4 620,222 - -0.1 620,231 - -0.5 620,250 + -1.3 620,308 - +0.1 620,336 + +0.1 620,336 + +0.7 620,344 + -0.0 620,367 + +0.2 620,367 + -0.8 620,368 - -0.6 620,389 + -1.0 620,423 + +0.8 620,452 + +0.6 620,452 + +1.5 620,453 - +0.0 620,456 + -0.2 620,456 + +0.1 620,457 - -0.6 620,457 - -0.5 620,457 - -0.7 620,462 + +0.2 620,463 - -2.1 620,544 + -1.7 620,545 - -0.5 620,647 - dtpB BNILDI_03200 0.13 +0.4 620,761 + dtpB BNILDI_03200 0.21 -0.6 620,761 + dtpB BNILDI_03200 0.21 +0.7 620,762 - dtpB BNILDI_03200 0.21 -0.1 620,762 - dtpB BNILDI_03200 0.21 +0.8 620,766 - dtpB BNILDI_03200 0.21 +0.6 620,766 - dtpB BNILDI_03200 0.21 +0.7 620,766 - dtpB BNILDI_03200 0.21 +0.6 620,822 + dtpB BNILDI_03200 0.25 -2.1 620,901 + dtpB BNILDI_03200 0.30 -0.7 620,901 + dtpB BNILDI_03200 0.30 +0.8 620,901 + dtpB BNILDI_03200 0.30 +1.3 620,901 + dtpB BNILDI_03200 0.30 +0.0 620,901 + dtpB BNILDI_03200 0.30 +0.0 620,901 + dtpB BNILDI_03200 0.30 -1.1 620,901 + dtpB BNILDI_03200 0.30 -0.7 620,902 - dtpB BNILDI_03200 0.30 -1.9 620,902 - dtpB BNILDI_03200 0.30 -3.0 620,904 - dtpB BNILDI_03200 0.30 +1.1 620,960 + dtpB BNILDI_03200 0.34 +0.2 620,982 + dtpB BNILDI_03200 0.36 -0.3 620,982 + dtpB BNILDI_03200 0.36 -1.0 620,982 + dtpB BNILDI_03200 0.36 +0.3 620,982 + dtpB BNILDI_03200 0.36 -1.1 621,008 + dtpB BNILDI_03200 0.37 +1.4 621,102 + dtpB BNILDI_03200 0.44 +0.9 621,102 + dtpB BNILDI_03200 0.44 +0.9 621,102 + dtpB BNILDI_03200 0.44 +0.3 621,102 + dtpB BNILDI_03200 0.44 -0.2 621,102 + dtpB BNILDI_03200 0.44 +0.5 621,102 + dtpB BNILDI_03200 0.44 +0.9 621,102 + dtpB BNILDI_03200 0.44 +0.6 621,103 - dtpB BNILDI_03200 0.44 +0.7 621,103 - dtpB BNILDI_03200 0.44 +0.2 621,109 + dtpB BNILDI_03200 0.44 +2.9 621,109 + dtpB BNILDI_03200 0.44 -0.4 621,110 - dtpB BNILDI_03200 0.44 +0.8 621,160 + dtpB BNILDI_03200 0.48 -0.7 621,161 - dtpB BNILDI_03200 0.48 -1.8 621,255 - dtpB BNILDI_03200 0.54 -0.0 621,301 - dtpB BNILDI_03200 0.57 +0.5 621,453 + dtpB BNILDI_03200 0.68 +1.4 621,453 + dtpB BNILDI_03200 0.68 +0.5 621,518 + dtpB BNILDI_03200 0.72 +0.4 621,518 + dtpB BNILDI_03200 0.72 +2.4 621,518 + dtpB BNILDI_03200 0.72 -0.1 621,518 + dtpB BNILDI_03200 0.72 -0.4 621,518 + dtpB BNILDI_03200 0.72 +0.3 621,518 + dtpB BNILDI_03200 0.72 -0.1 621,612 + dtpB BNILDI_03200 0.79 +0.2 621,612 + dtpB BNILDI_03200 0.79 -0.6 621,612 + dtpB BNILDI_03200 0.79 +3.3 621,612 + dtpB BNILDI_03200 0.79 -0.2 621,644 + dtpB BNILDI_03200 0.81 -1.3 621,645 - dtpB BNILDI_03200 0.81 -1.2 621,754 - dtpB BNILDI_03200 0.88 +0.4 621,816 + -0.4 621,816 + -1.6 621,817 - +0.5 621,834 - -2.0 621,866 - +2.2 621,924 + -2.6 621,928 + +0.1 621,977 - -2.5 622,007 + +0.4 622,007 + +0.7 622,008 - -1.6 622,077 + rsmJ BNILDI_03205 0.14 +0.3 622,078 - rsmJ BNILDI_03205 0.14 -1.3 622,119 + rsmJ BNILDI_03205 0.19 -0.2 622,120 - rsmJ BNILDI_03205 0.19 +0.6 622,281 + rsmJ BNILDI_03205 0.41 -0.0 622,281 + rsmJ BNILDI_03205 0.41 +0.1 622,282 - rsmJ BNILDI_03205 0.41 -0.2 622,681 - +0.0 622,921 + -0.6
Or see this region's nucleotide sequence