Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhhT and acpT are separated by 54 nucleotides acpT and nikA are separated by 110 nucleotides nikA and nikB overlap by 1 nucleotides nikB and nikC overlap by 4 nucleotides
BNILDI_03060: yhhT - Putative transport protein YhhT, at 591,741 to 592,790
yhhT
BNILDI_03065: acpT - 4'-phosphopantetheinyl transferase AcpT, at 592,845 to 593,432
acpT
BNILDI_03070: nikA - nickel ABC transporter substrate-binding protein, at 593,543 to 595,117
nikA
BNILDI_03075: nikB - nickel ABC transporter permease subunit NikB, at 595,117 to 596,061
nikB
BNILDI_03080: nikC - nickel ABC transporter permease subunit NikC, at 596,058 to 596,891
nikC
Position (kb) 593
594
595
596 Strain fitness (log2 ratio) -2
-1
0
1
2 at 592.547 kb on - strand, within yhhT at 592.576 kb on + strand, within yhhT at 592.624 kb on + strand, within yhhT at 592.625 kb on - strand, within yhhT at 592.640 kb on - strand, within yhhT at 592.675 kb on + strand, within yhhT at 592.676 kb on - strand, within yhhT at 592.676 kb on - strand, within yhhT at 592.676 kb on - strand, within yhhT at 592.804 kb on - strand at 592.845 kb on - strand at 592.845 kb on - strand at 592.848 kb on + strand at 592.848 kb on + strand at 592.849 kb on - strand at 593.001 kb on + strand, within acpT at 593.001 kb on + strand, within acpT at 593.002 kb on - strand, within acpT at 593.057 kb on - strand, within acpT at 593.057 kb on - strand, within acpT at 593.057 kb on - strand, within acpT at 593.057 kb on - strand, within acpT at 593.313 kb on + strand, within acpT at 593.314 kb on - strand, within acpT at 593.455 kb on + strand at 593.456 kb on - strand at 593.520 kb on + strand at 593.526 kb on - strand at 593.568 kb on + strand at 593.569 kb on - strand at 593.596 kb on + strand at 593.708 kb on + strand, within nikA at 593.726 kb on + strand, within nikA at 593.727 kb on - strand, within nikA at 593.789 kb on - strand, within nikA at 593.950 kb on + strand, within nikA at 593.985 kb on - strand, within nikA at 593.985 kb on - strand, within nikA at 593.987 kb on + strand, within nikA at 594.050 kb on - strand, within nikA at 594.279 kb on + strand, within nikA at 594.415 kb on + strand, within nikA at 594.456 kb on + strand, within nikA at 594.457 kb on - strand, within nikA at 594.458 kb on + strand, within nikA at 594.459 kb on - strand, within nikA at 594.697 kb on + strand, within nikA at 594.698 kb on - strand, within nikA at 594.752 kb on + strand, within nikA at 594.752 kb on + strand, within nikA at 595.013 kb on + strand at 595.014 kb on - strand at 595.100 kb on - strand at 595.116 kb on - strand at 595.127 kb on - strand at 595.130 kb on + strand at 595.130 kb on + strand at 595.130 kb on + strand at 595.131 kb on - strand at 595.131 kb on - strand at 595.309 kb on + strand, within nikB at 595.318 kb on + strand, within nikB at 595.359 kb on + strand, within nikB at 595.555 kb on - strand, within nikB at 595.598 kb on - strand, within nikB at 595.671 kb on + strand, within nikB at 595.672 kb on - strand, within nikB at 595.710 kb on + strand, within nikB at 595.711 kb on - strand, within nikB at 595.711 kb on - strand, within nikB at 595.711 kb on - strand, within nikB at 595.926 kb on + strand, within nikB at 595.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 592,547 - yhhT BNILDI_03060 0.77 +1.2 592,576 + yhhT BNILDI_03060 0.80 -0.4 592,624 + yhhT BNILDI_03060 0.84 -2.2 592,625 - yhhT BNILDI_03060 0.84 -1.2 592,640 - yhhT BNILDI_03060 0.86 -1.6 592,675 + yhhT BNILDI_03060 0.89 -0.3 592,676 - yhhT BNILDI_03060 0.89 -0.4 592,676 - yhhT BNILDI_03060 0.89 +0.7 592,676 - yhhT BNILDI_03060 0.89 -0.7 592,804 - +2.4 592,845 - -0.2 592,845 - +0.4 592,848 + -0.1 592,848 + +1.0 592,849 - -0.2 593,001 + acpT BNILDI_03065 0.27 -1.9 593,001 + acpT BNILDI_03065 0.27 +0.7 593,002 - acpT BNILDI_03065 0.27 -0.3 593,057 - acpT BNILDI_03065 0.36 -0.4 593,057 - acpT BNILDI_03065 0.36 -0.2 593,057 - acpT BNILDI_03065 0.36 +1.0 593,057 - acpT BNILDI_03065 0.36 -0.8 593,313 + acpT BNILDI_03065 0.80 -0.3 593,314 - acpT BNILDI_03065 0.80 -0.8 593,455 + +0.9 593,456 - +1.8 593,520 + +0.6 593,526 - -2.0 593,568 + -0.4 593,569 - +0.1 593,596 + -0.6 593,708 + nikA BNILDI_03070 0.10 +0.7 593,726 + nikA BNILDI_03070 0.12 +0.2 593,727 - nikA BNILDI_03070 0.12 -0.0 593,789 - nikA BNILDI_03070 0.16 -0.4 593,950 + nikA BNILDI_03070 0.26 -1.0 593,985 - nikA BNILDI_03070 0.28 +0.6 593,985 - nikA BNILDI_03070 0.28 -0.1 593,987 + nikA BNILDI_03070 0.28 -0.1 594,050 - nikA BNILDI_03070 0.32 +0.1 594,279 + nikA BNILDI_03070 0.47 -0.6 594,415 + nikA BNILDI_03070 0.55 -1.9 594,456 + nikA BNILDI_03070 0.58 +0.5 594,457 - nikA BNILDI_03070 0.58 -0.1 594,458 + nikA BNILDI_03070 0.58 +0.2 594,459 - nikA BNILDI_03070 0.58 +0.9 594,697 + nikA BNILDI_03070 0.73 +2.2 594,698 - nikA BNILDI_03070 0.73 +1.9 594,752 + nikA BNILDI_03070 0.77 -0.3 594,752 + nikA BNILDI_03070 0.77 +0.6 595,013 + -1.7 595,014 - -2.2 595,100 - +0.5 595,116 - -0.1 595,127 - +0.8 595,130 + +0.1 595,130 + -0.2 595,130 + +0.8 595,131 - -0.5 595,131 - +2.1 595,309 + nikB BNILDI_03075 0.20 +0.8 595,318 + nikB BNILDI_03075 0.21 +0.8 595,359 + nikB BNILDI_03075 0.26 -0.2 595,555 - nikB BNILDI_03075 0.46 -1.1 595,598 - nikB BNILDI_03075 0.51 -0.1 595,671 + nikB BNILDI_03075 0.59 -0.9 595,672 - nikB BNILDI_03075 0.59 -0.8 595,710 + nikB BNILDI_03075 0.63 -1.4 595,711 - nikB BNILDI_03075 0.63 -0.5 595,711 - nikB BNILDI_03075 0.63 -1.2 595,711 - nikB BNILDI_03075 0.63 +0.7 595,926 + nikB BNILDI_03075 0.86 -1.2 595,990 - +0.5
Or see this region's nucleotide sequence