Strain Fitness in Escherichia coli ECRC62 around BNILDI_02845

Experiment: Control_ECRC62

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglgB and yhgO are separated by 157 nucleotidesyhgO and asd are separated by 73 nucleotides BNILDI_02840: glgB - 1,4-alpha-glucan branching enzyme, at 551,216 to 553,402 glgB BNILDI_02845: yhgO - Protein YhgO, at 553,560 to 553,601 yhgO BNILDI_02850: asd - aspartate-semialdehyde dehydrogenase, at 553,675 to 554,778 asd Position (kb) 553 554Strain fitness (log2 ratio) -2 -1 0 1 2at 552.575 kb on - strand, within glgBat 552.580 kb on - strand, within glgBat 552.666 kb on + strand, within glgBat 552.666 kb on + strand, within glgBat 552.666 kb on + strand, within glgBat 552.667 kb on - strand, within glgBat 552.670 kb on + strand, within glgBat 552.720 kb on - strand, within glgBat 552.720 kb on - strand, within glgBat 552.745 kb on + strand, within glgBat 552.746 kb on - strand, within glgBat 552.786 kb on + strand, within glgBat 552.835 kb on - strand, within glgBat 552.835 kb on - strand, within glgBat 552.838 kb on + strand, within glgBat 552.930 kb on + strand, within glgBat 552.930 kb on + strand, within glgBat 553.010 kb on - strand, within glgBat 553.010 kb on - strand, within glgBat 553.012 kb on + strand, within glgBat 553.012 kb on + strand, within glgBat 553.012 kb on + strand, within glgBat 553.013 kb on - strand, within glgBat 553.013 kb on - strand, within glgBat 553.013 kb on - strand, within glgBat 553.013 kb on - strand, within glgBat 553.065 kb on - strand, within glgBat 553.067 kb on + strand, within glgBat 553.319 kb on - strandat 553.385 kb on - strandat 553.540 kb on - strandat 553.540 kb on - strandat 553.547 kb on + strandat 553.547 kb on + strandat 553.569 kb on - strand, within yhgOat 553.581 kb on - strand, within yhgOat 553.584 kb on + strand, within yhgOat 553.617 kb on - strandat 553.617 kb on - strandat 553.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
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552,575 - glgB BNILDI_02840 0.62 +1.5
552,580 - glgB BNILDI_02840 0.62 -0.0
552,666 + glgB BNILDI_02840 0.66 -2.2
552,666 + glgB BNILDI_02840 0.66 -0.4
552,666 + glgB BNILDI_02840 0.66 -0.1
552,667 - glgB BNILDI_02840 0.66 -1.1
552,670 + glgB BNILDI_02840 0.66 +1.8
552,720 - glgB BNILDI_02840 0.69 +1.0
552,720 - glgB BNILDI_02840 0.69 +1.1
552,745 + glgB BNILDI_02840 0.70 -0.2
552,746 - glgB BNILDI_02840 0.70 +0.7
552,786 + glgB BNILDI_02840 0.72 -0.4
552,835 - glgB BNILDI_02840 0.74 -0.9
552,835 - glgB BNILDI_02840 0.74 +1.3
552,838 + glgB BNILDI_02840 0.74 +0.6
552,930 + glgB BNILDI_02840 0.78 +2.1
552,930 + glgB BNILDI_02840 0.78 +0.3
553,010 - glgB BNILDI_02840 0.82 -1.0
553,010 - glgB BNILDI_02840 0.82 -1.0
553,012 + glgB BNILDI_02840 0.82 +0.2
553,012 + glgB BNILDI_02840 0.82 -0.1
553,012 + glgB BNILDI_02840 0.82 -0.8
553,013 - glgB BNILDI_02840 0.82 +1.2
553,013 - glgB BNILDI_02840 0.82 -0.3
553,013 - glgB BNILDI_02840 0.82 +0.4
553,013 - glgB BNILDI_02840 0.82 -0.2
553,065 - glgB BNILDI_02840 0.85 +1.2
553,067 + glgB BNILDI_02840 0.85 +1.8
553,319 - -0.8
553,385 - -0.2
553,540 - +0.9
553,540 - -1.5
553,547 + +1.1
553,547 + -2.6
553,569 - yhgO BNILDI_02845 0.21 +0.6
553,581 - yhgO BNILDI_02845 0.50 +1.0
553,584 + yhgO BNILDI_02845 0.57 -0.7
553,617 - -0.6
553,617 - +0.7
553,627 + +0.1

Or see this region's nucleotide sequence