Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dusB and fis are separated by 25 nucleotides fis and yhdJ are separated by 85 nucleotides yhdJ and yhdU are separated by 83 nucleotides yhdU and acrS are separated by 2 nucleotides
BNILDI_02050: dusB - tRNA dihydrouridine synthase DusB, at 407,347 to 408,312
dusB
BNILDI_02055: fis - DNA-binding transcriptional regulator Fis, at 408,338 to 408,634
fis
BNILDI_02060: yhdJ - adenine-specific DNA-methyltransferase, at 408,720 to 409,604
yhdJ
BNILDI_02065: yhdU - Inner membrane protein YhdU, at 409,688 to 409,867
yhdU
BNILDI_02070: acrS - multidrug efflux transporter transcriptional repressor AcrS, at 409,870 to 410,532
acrS
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 407.754 kb on + strand, within dusB at 407.794 kb on - strand, within dusB at 407.955 kb on + strand, within dusB at 407.991 kb on + strand, within dusB at 407.991 kb on + strand, within dusB at 408.154 kb on + strand, within dusB at 408.154 kb on + strand, within dusB at 408.154 kb on + strand, within dusB at 408.337 kb on + strand at 408.450 kb on - strand, within fis at 408.697 kb on + strand at 408.805 kb on + strand at 408.806 kb on - strand at 408.846 kb on + strand, within yhdJ at 408.846 kb on + strand, within yhdJ at 408.847 kb on - strand, within yhdJ at 408.848 kb on + strand, within yhdJ at 408.848 kb on + strand, within yhdJ at 408.966 kb on + strand, within yhdJ at 408.966 kb on + strand, within yhdJ at 408.966 kb on + strand, within yhdJ at 408.967 kb on - strand, within yhdJ at 408.967 kb on - strand, within yhdJ at 408.967 kb on - strand, within yhdJ at 408.971 kb on + strand, within yhdJ at 408.972 kb on - strand, within yhdJ at 409.054 kb on - strand, within yhdJ at 409.098 kb on + strand, within yhdJ at 409.098 kb on + strand, within yhdJ at 409.098 kb on + strand, within yhdJ at 409.099 kb on - strand, within yhdJ at 409.099 kb on - strand, within yhdJ at 409.099 kb on - strand, within yhdJ at 409.157 kb on + strand, within yhdJ at 409.166 kb on - strand, within yhdJ at 409.227 kb on + strand, within yhdJ at 409.228 kb on - strand, within yhdJ at 409.279 kb on - strand, within yhdJ at 409.294 kb on - strand, within yhdJ at 409.398 kb on - strand, within yhdJ at 409.398 kb on - strand, within yhdJ at 409.443 kb on - strand, within yhdJ at 409.602 kb on + strand at 409.603 kb on - strand at 409.646 kb on + strand at 409.701 kb on - strand at 409.744 kb on + strand, within yhdU at 409.943 kb on - strand, within acrS at 410.175 kb on + strand, within acrS at 410.237 kb on + strand, within acrS at 410.317 kb on + strand, within acrS at 410.387 kb on + strand, within acrS
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 407,754 + dusB BNILDI_02050 0.42 -0.2 407,794 - dusB BNILDI_02050 0.46 -1.1 407,955 + dusB BNILDI_02050 0.63 +1.4 407,991 + dusB BNILDI_02050 0.67 +1.2 407,991 + dusB BNILDI_02050 0.67 +1.2 408,154 + dusB BNILDI_02050 0.84 +0.8 408,154 + dusB BNILDI_02050 0.84 +1.3 408,154 + dusB BNILDI_02050 0.84 -1.0 408,337 + +2.8 408,450 - fis BNILDI_02055 0.38 +1.0 408,697 + +0.0 408,805 + -2.4 408,806 - +0.1 408,846 + yhdJ BNILDI_02060 0.14 +0.5 408,846 + yhdJ BNILDI_02060 0.14 +0.6 408,847 - yhdJ BNILDI_02060 0.14 +0.6 408,848 + yhdJ BNILDI_02060 0.14 +0.0 408,848 + yhdJ BNILDI_02060 0.14 -0.2 408,966 + yhdJ BNILDI_02060 0.28 -1.6 408,966 + yhdJ BNILDI_02060 0.28 -2.4 408,966 + yhdJ BNILDI_02060 0.28 -0.4 408,967 - yhdJ BNILDI_02060 0.28 -0.8 408,967 - yhdJ BNILDI_02060 0.28 -0.5 408,967 - yhdJ BNILDI_02060 0.28 -0.6 408,971 + yhdJ BNILDI_02060 0.28 -0.1 408,972 - yhdJ BNILDI_02060 0.28 +0.0 409,054 - yhdJ BNILDI_02060 0.38 -0.2 409,098 + yhdJ BNILDI_02060 0.43 +0.2 409,098 + yhdJ BNILDI_02060 0.43 +1.6 409,098 + yhdJ BNILDI_02060 0.43 +0.7 409,099 - yhdJ BNILDI_02060 0.43 -2.1 409,099 - yhdJ BNILDI_02060 0.43 +1.5 409,099 - yhdJ BNILDI_02060 0.43 -2.0 409,157 + yhdJ BNILDI_02060 0.49 -1.4 409,166 - yhdJ BNILDI_02060 0.50 +0.0 409,227 + yhdJ BNILDI_02060 0.57 +0.4 409,228 - yhdJ BNILDI_02060 0.57 +0.4 409,279 - yhdJ BNILDI_02060 0.63 -0.0 409,294 - yhdJ BNILDI_02060 0.65 -0.5 409,398 - yhdJ BNILDI_02060 0.77 -0.6 409,398 - yhdJ BNILDI_02060 0.77 -0.2 409,443 - yhdJ BNILDI_02060 0.82 +0.2 409,602 + +0.9 409,603 - +0.6 409,646 + +1.7 409,701 - +0.2 409,744 + yhdU BNILDI_02065 0.31 -2.3 409,943 - acrS BNILDI_02070 0.11 -1.1 410,175 + acrS BNILDI_02070 0.46 -0.2 410,237 + acrS BNILDI_02070 0.55 -0.2 410,317 + acrS BNILDI_02070 0.67 +0.8 410,387 + acrS BNILDI_02070 0.78 -2.1
Or see this region's nucleotide sequence