Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt agaC and agaD overlap by 11 nucleotides agaD and agaI are separated by 54 nucleotides agaI and yraH are separated by 399 nucleotides
BNILDI_01460: agaC - PTS galactosamine transporter subunit IIC, at 287,803 to 288,606
agaC
BNILDI_01465: agaD - PTS galactosamine transporter subunit IID, at 288,596 to 289,387
agaD
BNILDI_01470: agaI - galactosamine-6-phosphate isomerase, at 289,442 to 290,143
agaI
BNILDI_01475: yraH - Uncharacterized fimbrial-like protein YraH, at 290,543 to 291,127
yraH
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 288.457 kb on + strand, within agaC at 288.458 kb on - strand, within agaC at 288.732 kb on - strand, within agaD at 288.733 kb on + strand, within agaD at 288.733 kb on + strand, within agaD at 288.772 kb on + strand, within agaD at 288.772 kb on + strand, within agaD at 288.787 kb on + strand, within agaD at 289.024 kb on + strand, within agaD at 289.025 kb on - strand, within agaD at 289.169 kb on + strand, within agaD at 289.170 kb on - strand, within agaD at 289.170 kb on - strand, within agaD at 289.177 kb on + strand, within agaD at 289.178 kb on - strand, within agaD at 289.178 kb on - strand, within agaD at 289.178 kb on - strand, within agaD at 289.180 kb on + strand, within agaD at 289.211 kb on - strand, within agaD at 289.278 kb on - strand, within agaD at 289.357 kb on + strand at 289.358 kb on - strand at 289.422 kb on + strand at 289.426 kb on + strand at 289.471 kb on + strand at 289.471 kb on + strand at 289.480 kb on - strand at 289.504 kb on - strand at 289.574 kb on + strand, within agaI at 289.575 kb on - strand, within agaI at 289.575 kb on - strand, within agaI at 289.575 kb on - strand, within agaI at 289.580 kb on + strand, within agaI at 289.580 kb on + strand, within agaI at 289.581 kb on - strand, within agaI at 289.615 kb on + strand, within agaI at 289.695 kb on + strand, within agaI at 289.825 kb on - strand, within agaI at 289.834 kb on - strand, within agaI at 289.901 kb on - strand, within agaI at 289.941 kb on + strand, within agaI at 290.116 kb on + strand at 290.123 kb on - strand at 290.138 kb on - strand at 290.198 kb on + strand at 290.513 kb on + strand at 290.514 kb on - strand at 290.674 kb on + strand, within yraH at 290.703 kb on - strand, within yraH at 290.703 kb on - strand, within yraH at 290.705 kb on - strand, within yraH at 290.758 kb on + strand, within yraH at 290.771 kb on - strand, within yraH at 290.972 kb on - strand, within yraH at 290.994 kb on - strand, within yraH at 291.019 kb on + strand, within yraH at 291.044 kb on + strand, within yraH at 291.047 kb on + strand, within yraH at 291.047 kb on + strand, within yraH at 291.047 kb on + strand, within yraH at 291.048 kb on - strand, within yraH at 291.051 kb on + strand, within yraH at 291.052 kb on - strand, within yraH at 291.125 kb on + strand at 291.128 kb on + strand at 291.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 288,457 + agaC BNILDI_01460 0.81 -0.3 288,458 - agaC BNILDI_01460 0.81 +0.7 288,732 - agaD BNILDI_01465 0.17 -1.8 288,733 + agaD BNILDI_01465 0.17 -1.0 288,733 + agaD BNILDI_01465 0.17 +3.9 288,772 + agaD BNILDI_01465 0.22 -1.0 288,772 + agaD BNILDI_01465 0.22 +0.9 288,787 + agaD BNILDI_01465 0.24 -1.6 289,024 + agaD BNILDI_01465 0.54 +1.2 289,025 - agaD BNILDI_01465 0.54 -0.2 289,169 + agaD BNILDI_01465 0.72 -1.0 289,170 - agaD BNILDI_01465 0.72 -0.3 289,170 - agaD BNILDI_01465 0.72 -1.0 289,177 + agaD BNILDI_01465 0.73 -0.2 289,178 - agaD BNILDI_01465 0.73 +0.0 289,178 - agaD BNILDI_01465 0.73 -0.1 289,178 - agaD BNILDI_01465 0.73 +1.5 289,180 + agaD BNILDI_01465 0.74 +0.5 289,211 - agaD BNILDI_01465 0.78 -0.8 289,278 - agaD BNILDI_01465 0.86 +1.0 289,357 + +1.0 289,358 - +0.7 289,422 + -0.5 289,426 + -0.1 289,471 + -1.2 289,471 + +4.3 289,480 - -0.3 289,504 - -1.2 289,574 + agaI BNILDI_01470 0.19 -2.7 289,575 - agaI BNILDI_01470 0.19 -1.5 289,575 - agaI BNILDI_01470 0.19 +0.3 289,575 - agaI BNILDI_01470 0.19 +0.1 289,580 + agaI BNILDI_01470 0.20 +0.3 289,580 + agaI BNILDI_01470 0.20 -2.8 289,581 - agaI BNILDI_01470 0.20 -0.7 289,615 + agaI BNILDI_01470 0.25 +0.6 289,695 + agaI BNILDI_01470 0.36 +0.6 289,825 - agaI BNILDI_01470 0.55 +0.9 289,834 - agaI BNILDI_01470 0.56 +2.0 289,901 - agaI BNILDI_01470 0.65 +4.1 289,941 + agaI BNILDI_01470 0.71 -1.2 290,116 + +0.2 290,123 - -0.3 290,138 - -0.5 290,198 + +1.2 290,513 + +0.4 290,514 - +1.3 290,674 + yraH BNILDI_01475 0.22 -1.2 290,703 - yraH BNILDI_01475 0.27 +0.6 290,703 - yraH BNILDI_01475 0.27 +2.3 290,705 - yraH BNILDI_01475 0.28 +1.0 290,758 + yraH BNILDI_01475 0.37 -0.1 290,771 - yraH BNILDI_01475 0.39 +1.7 290,972 - yraH BNILDI_01475 0.73 +0.2 290,994 - yraH BNILDI_01475 0.77 +0.0 291,019 + yraH BNILDI_01475 0.81 -0.5 291,044 + yraH BNILDI_01475 0.86 -0.4 291,047 + yraH BNILDI_01475 0.86 -0.8 291,047 + yraH BNILDI_01475 0.86 +0.4 291,047 + yraH BNILDI_01475 0.86 -1.0 291,048 - yraH BNILDI_01475 0.86 -1.0 291,051 + yraH BNILDI_01475 0.87 -1.0 291,052 - yraH BNILDI_01475 0.87 -0.3 291,125 + -0.5 291,128 + -0.9 291,129 - -0.6
Or see this region's nucleotide sequence