Strain Fitness in Escherichia coli ECRC62 around BNILDI_00620

Experiment: Control_ECRC62

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_00615 and wcaG overlap by 4 nucleotideswcaG and BNILDI_00625 are separated by 31 nucleotidesBNILDI_00625 and BNILDI_00630 overlap by 1 nucleotides BNILDI_00615: BNILDI_00615 - Acyl-CoA synthetase, at 119,311 to 121,032 _00615 BNILDI_00620: wcaG - short-chain dehydrogenase, at 121,029 to 121,943 wcaG BNILDI_00625: BNILDI_00625 - phosphopantetheine attachment site family protein, at 121,975 to 122,223 _00625 BNILDI_00630: BNILDI_00630 - 8-amino-7-oxononanoate synthase, at 122,223 to 123,395 _00630 Position (kb) 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 120.047 kb on - strand, within BNILDI_00615at 120.280 kb on - strand, within BNILDI_00615at 120.291 kb on + strand, within BNILDI_00615at 120.510 kb on + strand, within BNILDI_00615at 120.534 kb on - strand, within BNILDI_00615at 120.541 kb on - strand, within BNILDI_00615at 120.624 kb on - strand, within BNILDI_00615at 120.665 kb on - strand, within BNILDI_00615at 120.665 kb on - strand, within BNILDI_00615at 120.681 kb on + strand, within BNILDI_00615at 120.693 kb on + strand, within BNILDI_00615at 120.694 kb on - strand, within BNILDI_00615at 120.733 kb on + strand, within BNILDI_00615at 120.734 kb on - strand, within BNILDI_00615at 120.735 kb on + strand, within BNILDI_00615at 120.735 kb on + strand, within BNILDI_00615at 120.735 kb on + strand, within BNILDI_00615at 120.736 kb on - strand, within BNILDI_00615at 120.931 kb on - strandat 120.995 kb on - strandat 121.077 kb on + strandat 121.078 kb on - strandat 121.079 kb on + strandat 121.079 kb on + strandat 121.131 kb on - strand, within wcaGat 121.154 kb on + strand, within wcaGat 121.188 kb on - strand, within wcaGat 121.199 kb on + strand, within wcaGat 121.200 kb on - strand, within wcaGat 121.200 kb on - strand, within wcaGat 121.352 kb on + strand, within wcaGat 121.480 kb on - strand, within wcaGat 121.559 kb on + strand, within wcaGat 121.630 kb on + strand, within wcaGat 121.631 kb on - strand, within wcaGat 121.645 kb on - strand, within wcaGat 121.691 kb on - strand, within wcaGat 121.739 kb on + strand, within wcaGat 121.811 kb on + strand, within wcaGat 121.874 kb on + strandat 121.886 kb on + strandat 121.889 kb on + strandat 121.991 kb on + strandat 122.003 kb on - strand, within BNILDI_00625at 122.003 kb on - strand, within BNILDI_00625at 122.111 kb on + strand, within BNILDI_00625at 122.152 kb on - strand, within BNILDI_00625at 122.154 kb on + strand, within BNILDI_00625at 122.199 kb on - strandat 122.199 kb on - strandat 122.231 kb on - strandat 122.232 kb on + strandat 122.241 kb on + strandat 122.241 kb on + strandat 122.241 kb on + strandat 122.242 kb on - strandat 122.375 kb on + strand, within BNILDI_00630at 122.376 kb on - strand, within BNILDI_00630at 122.396 kb on + strand, within BNILDI_00630at 122.397 kb on - strand, within BNILDI_00630at 122.561 kb on + strand, within BNILDI_00630at 122.643 kb on + strand, within BNILDI_00630at 122.644 kb on - strand, within BNILDI_00630at 122.676 kb on - strand, within BNILDI_00630at 122.772 kb on + strand, within BNILDI_00630at 122.773 kb on - strand, within BNILDI_00630at 122.773 kb on - strand, within BNILDI_00630at 122.839 kb on - strand, within BNILDI_00630at 122.934 kb on - strand, within BNILDI_00630at 122.942 kb on + strand, within BNILDI_00630

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC62
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120,047 - BNILDI_00615 0.43 +0.2
120,280 - BNILDI_00615 0.56 +1.8
120,291 + BNILDI_00615 0.57 +0.4
120,510 + BNILDI_00615 0.70 -2.8
120,534 - BNILDI_00615 0.71 +0.3
120,541 - BNILDI_00615 0.71 +1.4
120,624 - BNILDI_00615 0.76 -0.8
120,665 - BNILDI_00615 0.79 -0.0
120,665 - BNILDI_00615 0.79 +0.5
120,681 + BNILDI_00615 0.80 -1.0
120,693 + BNILDI_00615 0.80 -0.7
120,694 - BNILDI_00615 0.80 -0.3
120,733 + BNILDI_00615 0.83 +0.1
120,734 - BNILDI_00615 0.83 -1.7
120,735 + BNILDI_00615 0.83 -1.4
120,735 + BNILDI_00615 0.83 -1.0
120,735 + BNILDI_00615 0.83 +0.9
120,736 - BNILDI_00615 0.83 -0.6
120,931 - +1.6
120,995 - -0.6
121,077 + -0.4
121,078 - -2.3
121,079 + +0.1
121,079 + -0.0
121,131 - wcaG BNILDI_00620 0.11 +0.5
121,154 + wcaG BNILDI_00620 0.14 -2.0
121,188 - wcaG BNILDI_00620 0.17 -0.3
121,199 + wcaG BNILDI_00620 0.19 -2.0
121,200 - wcaG BNILDI_00620 0.19 +0.3
121,200 - wcaG BNILDI_00620 0.19 +0.5
121,352 + wcaG BNILDI_00620 0.35 +0.7
121,480 - wcaG BNILDI_00620 0.49 -0.1
121,559 + wcaG BNILDI_00620 0.58 +2.2
121,630 + wcaG BNILDI_00620 0.66 -2.1
121,631 - wcaG BNILDI_00620 0.66 +1.6
121,645 - wcaG BNILDI_00620 0.67 -0.1
121,691 - wcaG BNILDI_00620 0.72 +0.0
121,739 + wcaG BNILDI_00620 0.78 -0.5
121,811 + wcaG BNILDI_00620 0.85 +0.2
121,874 + -0.1
121,886 + +2.2
121,889 + +0.5
121,991 + +1.3
122,003 - BNILDI_00625 0.11 -0.1
122,003 - BNILDI_00625 0.11 -0.5
122,111 + BNILDI_00625 0.55 +0.6
122,152 - BNILDI_00625 0.71 +0.7
122,154 + BNILDI_00625 0.72 -0.0
122,199 - -1.1
122,199 - -2.5
122,231 - -0.4
122,232 + -0.8
122,241 + +1.8
122,241 + -0.5
122,241 + -1.3
122,242 - +0.7
122,375 + BNILDI_00630 0.13 -0.2
122,376 - BNILDI_00630 0.13 +0.5
122,396 + BNILDI_00630 0.15 +0.1
122,397 - BNILDI_00630 0.15 -0.1
122,561 + BNILDI_00630 0.29 +0.1
122,643 + BNILDI_00630 0.36 +0.2
122,644 - BNILDI_00630 0.36 +0.1
122,676 - BNILDI_00630 0.39 -1.5
122,772 + BNILDI_00630 0.47 -0.6
122,773 - BNILDI_00630 0.47 -1.4
122,773 - BNILDI_00630 0.47 +0.4
122,839 - BNILDI_00630 0.53 +0.2
122,934 - BNILDI_00630 0.61 +1.1
122,942 + BNILDI_00630 0.61 +2.2

Or see this region's nucleotide sequence