Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_00545 and gspS2 are separated by 158 nucleotides gspS2 and pppA are separated by 65 nucleotides pppA and sslE are separated by 147 nucleotides
BNILDI_00545: BNILDI_00545 - Type II secretion protein GspC, at 101,346 to 101,711
_00545
BNILDI_00550: gspS2 - Pilotin AspS 2, at 101,870 to 102,280
gspS2
BNILDI_00555: pppA - prepilin peptidase PppA, at 102,346 to 103,155
pppA
BNILDI_00560: sslE - lipoprotein metalloprotease SslE, at 103,303 to 107,865
sslE
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 101.360 kb on + strand at 101.401 kb on + strand, within BNILDI_00545 at 101.401 kb on + strand, within BNILDI_00545 at 101.402 kb on - strand, within BNILDI_00545 at 101.478 kb on - strand, within BNILDI_00545 at 101.700 kb on - strand at 101.856 kb on - strand at 101.935 kb on + strand, within gspS2 at 102.070 kb on + strand, within gspS2 at 102.249 kb on - strand at 102.365 kb on + strand at 102.445 kb on + strand, within pppA at 102.446 kb on - strand, within pppA at 102.446 kb on - strand, within pppA at 102.507 kb on + strand, within pppA at 102.508 kb on - strand, within pppA at 102.508 kb on - strand, within pppA at 102.508 kb on - strand, within pppA at 102.511 kb on + strand, within pppA at 102.512 kb on - strand, within pppA at 102.512 kb on - strand, within pppA at 102.512 kb on - strand, within pppA at 102.526 kb on + strand, within pppA at 102.527 kb on - strand, within pppA at 102.529 kb on + strand, within pppA at 102.530 kb on - strand, within pppA at 102.530 kb on - strand, within pppA at 102.764 kb on - strand, within pppA at 102.835 kb on + strand, within pppA at 102.922 kb on - strand, within pppA at 102.985 kb on + strand, within pppA at 103.176 kb on - strand at 103.257 kb on + strand at 103.258 kb on - strand at 103.305 kb on - strand at 103.320 kb on + strand at 103.321 kb on - strand at 103.321 kb on - strand at 103.321 kb on - strand at 103.745 kb on + strand at 103.746 kb on - strand at 103.828 kb on - strand, within sslE at 103.860 kb on - strand, within sslE at 103.948 kb on + strand, within sslE at 104.109 kb on - strand, within sslE at 104.127 kb on + strand, within sslE
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 101,360 + +2.6 101,401 + BNILDI_00545 0.15 -0.3 101,401 + BNILDI_00545 0.15 -0.2 101,402 - BNILDI_00545 0.15 +0.6 101,478 - BNILDI_00545 0.36 -2.0 101,700 - -2.1 101,856 - +1.4 101,935 + gspS2 BNILDI_00550 0.16 -0.4 102,070 + gspS2 BNILDI_00550 0.49 +0.7 102,249 - +0.0 102,365 + +0.7 102,445 + pppA BNILDI_00555 0.12 -1.4 102,446 - pppA BNILDI_00555 0.12 +0.1 102,446 - pppA BNILDI_00555 0.12 +0.4 102,507 + pppA BNILDI_00555 0.20 +0.6 102,508 - pppA BNILDI_00555 0.20 +0.9 102,508 - pppA BNILDI_00555 0.20 -0.9 102,508 - pppA BNILDI_00555 0.20 -0.2 102,511 + pppA BNILDI_00555 0.20 +0.5 102,512 - pppA BNILDI_00555 0.20 +0.7 102,512 - pppA BNILDI_00555 0.20 -0.5 102,512 - pppA BNILDI_00555 0.20 +1.1 102,526 + pppA BNILDI_00555 0.22 -1.5 102,527 - pppA BNILDI_00555 0.22 +1.0 102,529 + pppA BNILDI_00555 0.23 -2.2 102,530 - pppA BNILDI_00555 0.23 +0.0 102,530 - pppA BNILDI_00555 0.23 -0.5 102,764 - pppA BNILDI_00555 0.52 -0.2 102,835 + pppA BNILDI_00555 0.60 -2.7 102,922 - pppA BNILDI_00555 0.71 +0.8 102,985 + pppA BNILDI_00555 0.79 +1.0 103,176 - -1.3 103,257 + -0.3 103,258 - +0.0 103,305 - +0.7 103,320 + +0.3 103,321 - +0.5 103,321 - +0.3 103,321 - -1.0 103,745 + +0.8 103,746 - -0.2 103,828 - sslE BNILDI_00560 0.12 +0.1 103,860 - sslE BNILDI_00560 0.12 -0.8 103,948 + sslE BNILDI_00560 0.14 +0.4 104,109 - sslE BNILDI_00560 0.18 +0.2 104,127 + sslE BNILDI_00560 0.18 -1.1
Or see this region's nucleotide sequence