Experiment: Control_ECRC62
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgR and rpmE2-1 are separated by 359 nucleotides rpmE2-1 and BNILDI_00090 overlap by 1 nucleotides
BNILDI_00080: ykgR - Uncharacterized membrane protein YkgR, at 24,411 to 24,512
ykgR
BNILDI_00085: rpmE2-1 - type B 50S ribosomal protein L31, at 24,872 to 25,138
rpmE2-1
BNILDI_00090: BNILDI_00090 - 50S ribosomal protein L36 2, at 25,138 to 25,278
_00090
Position (kb) 25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.166 kb on + strand at 24.262 kb on + strand at 24.263 kb on - strand at 24.263 kb on - strand at 24.263 kb on - strand at 24.264 kb on + strand at 24.360 kb on + strand at 24.364 kb on + strand at 24.365 kb on - strand at 24.375 kb on - strand at 24.581 kb on - strand at 24.602 kb on + strand at 24.617 kb on - strand at 24.749 kb on + strand at 24.856 kb on - strand at 24.899 kb on + strand, within rpmE2-1 at 24.904 kb on + strand, within rpmE2-1 at 24.904 kb on + strand, within rpmE2-1 at 24.939 kb on - strand, within rpmE2-1 at 24.998 kb on + strand, within rpmE2-1 at 24.998 kb on + strand, within rpmE2-1 at 24.999 kb on - strand, within rpmE2-1 at 25.005 kb on - strand, within rpmE2-1 at 25.149 kb on + strand at 25.150 kb on - strand at 25.214 kb on + strand, within BNILDI_00090 at 25.215 kb on - strand, within BNILDI_00090 at 25.217 kb on - strand, within BNILDI_00090 at 25.217 kb on - strand, within BNILDI_00090 at 25.217 kb on - strand, within BNILDI_00090 at 25.227 kb on + strand, within BNILDI_00090 at 25.234 kb on - strand, within BNILDI_00090 at 25.263 kb on + strand, within BNILDI_00090 at 25.348 kb on + strand at 25.377 kb on + strand at 25.378 kb on - strand at 25.378 kb on - strand at 25.438 kb on + strand at 25.439 kb on - strand at 25.471 kb on - strand at 25.564 kb on + strand at 25.565 kb on - strand at 25.573 kb on + strand at 25.574 kb on - strand at 25.585 kb on + strand at 25.588 kb on + strand at 25.588 kb on + strand at 25.663 kb on - strand at 25.663 kb on - strand at 25.681 kb on - strand at 25.752 kb on + strand at 25.753 kb on - strand at 25.788 kb on + strand at 25.793 kb on - strand at 25.823 kb on - strand at 25.834 kb on - strand at 26.045 kb on + strand at 26.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC62 remove 24,166 + +0.8 24,262 + -0.0 24,263 - -0.1 24,263 - -0.9 24,263 - -0.3 24,264 + -0.6 24,360 + +0.4 24,364 + -0.6 24,365 - +0.9 24,375 - -0.9 24,581 - -0.5 24,602 + -2.4 24,617 - -0.9 24,749 + -0.6 24,856 - +0.3 24,899 + rpmE2-1 BNILDI_00085 0.10 -1.1 24,904 + rpmE2-1 BNILDI_00085 0.12 +0.2 24,904 + rpmE2-1 BNILDI_00085 0.12 -0.8 24,939 - rpmE2-1 BNILDI_00085 0.25 +0.6 24,998 + rpmE2-1 BNILDI_00085 0.47 +1.1 24,998 + rpmE2-1 BNILDI_00085 0.47 -2.9 24,999 - rpmE2-1 BNILDI_00085 0.48 +0.3 25,005 - rpmE2-1 BNILDI_00085 0.50 +0.8 25,149 + +0.9 25,150 - +0.4 25,214 + BNILDI_00090 0.54 +0.3 25,215 - BNILDI_00090 0.55 -1.7 25,217 - BNILDI_00090 0.56 +0.1 25,217 - BNILDI_00090 0.56 -2.5 25,217 - BNILDI_00090 0.56 +0.1 25,227 + BNILDI_00090 0.63 -0.2 25,234 - BNILDI_00090 0.68 +0.8 25,263 + BNILDI_00090 0.89 -1.5 25,348 + +2.2 25,377 + +0.2 25,378 - +0.2 25,378 - -0.1 25,438 + -0.7 25,439 - -0.5 25,471 - +0.3 25,564 + +0.9 25,565 - -0.3 25,573 + -0.1 25,574 - +0.7 25,585 + -2.1 25,588 + -1.2 25,588 + +0.1 25,663 - +1.2 25,663 - -0.9 25,681 - -2.5 25,752 + -0.1 25,753 - -0.3 25,788 + +0.9 25,793 - -1.3 25,823 - +0.4 25,834 - -0.2 26,045 + -0.9 26,268 - -0.9
Or see this region's nucleotide sequence