Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00278

Experiment: Phage M13-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00276 and OHPLBJKB_00277 overlap by 1 nucleotidesOHPLBJKB_00277 and OHPLBJKB_00278 are separated by 215 nucleotidesOHPLBJKB_00278 and OHPLBJKB_00279 are separated by 189 nucleotidesOHPLBJKB_00279 and OHPLBJKB_00280 are separated by 44 nucleotides OHPLBJKB_00276: OHPLBJKB_00276 - hypothetical protein, at 301,303 to 302,295 _00276 OHPLBJKB_00277: OHPLBJKB_00277 - hypothetical protein, at 302,295 to 302,897 _00277 OHPLBJKB_00278: OHPLBJKB_00278 - Aerobic glycerol-3-phosphate dehydrogenase, at 303,113 to 304,618 _00278 OHPLBJKB_00279: OHPLBJKB_00279 - Thiosulfate sulfurtransferase GlpE, at 304,808 to 305,134 _00279 OHPLBJKB_00280: OHPLBJKB_00280 - Rhomboid protease GlpG, at 305,179 to 306,009 _00280 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 302.155 kb on + strand, within OHPLBJKB_00276at 302.158 kb on - strand, within OHPLBJKB_00276at 302.158 kb on - strand, within OHPLBJKB_00276at 302.213 kb on + strandat 302.213 kb on + strandat 302.214 kb on - strandat 302.251 kb on + strandat 302.251 kb on + strandat 302.252 kb on - strandat 302.263 kb on + strandat 302.264 kb on - strandat 302.303 kb on + strandat 302.394 kb on - strand, within OHPLBJKB_00277at 302.544 kb on - strand, within OHPLBJKB_00277at 302.601 kb on + strand, within OHPLBJKB_00277at 302.605 kb on + strand, within OHPLBJKB_00277at 302.791 kb on - strand, within OHPLBJKB_00277at 302.814 kb on - strand, within OHPLBJKB_00277at 302.855 kb on - strandat 302.865 kb on - strandat 302.865 kb on - strandat 302.915 kb on + strandat 303.003 kb on + strandat 303.006 kb on - strandat 303.006 kb on - strandat 303.021 kb on + strandat 303.021 kb on + strandat 303.037 kb on - strandat 303.104 kb on + strandat 303.105 kb on - strandat 303.109 kb on + strandat 303.143 kb on - strandat 303.143 kb on - strandat 303.143 kb on - strandat 303.189 kb on - strandat 303.279 kb on + strand, within OHPLBJKB_00278at 303.427 kb on - strand, within OHPLBJKB_00278at 303.427 kb on - strand, within OHPLBJKB_00278at 303.512 kb on + strand, within OHPLBJKB_00278at 303.608 kb on - strand, within OHPLBJKB_00278at 303.682 kb on - strand, within OHPLBJKB_00278at 303.731 kb on - strand, within OHPLBJKB_00278at 303.731 kb on - strand, within OHPLBJKB_00278at 303.732 kb on + strand, within OHPLBJKB_00278at 303.732 kb on + strand, within OHPLBJKB_00278at 303.732 kb on + strand, within OHPLBJKB_00278at 303.733 kb on - strand, within OHPLBJKB_00278at 303.856 kb on + strand, within OHPLBJKB_00278at 303.856 kb on + strand, within OHPLBJKB_00278at 303.856 kb on + strand, within OHPLBJKB_00278at 303.857 kb on - strand, within OHPLBJKB_00278at 303.857 kb on - strand, within OHPLBJKB_00278at 303.857 kb on - strand, within OHPLBJKB_00278at 303.863 kb on - strand, within OHPLBJKB_00278at 303.882 kb on + strand, within OHPLBJKB_00278at 303.883 kb on - strand, within OHPLBJKB_00278at 303.883 kb on - strand, within OHPLBJKB_00278at 303.898 kb on + strand, within OHPLBJKB_00278at 303.919 kb on + strand, within OHPLBJKB_00278at 303.920 kb on - strand, within OHPLBJKB_00278at 303.948 kb on + strand, within OHPLBJKB_00278at 304.034 kb on - strand, within OHPLBJKB_00278at 304.034 kb on - strand, within OHPLBJKB_00278at 304.036 kb on - strand, within OHPLBJKB_00278at 304.036 kb on - strand, within OHPLBJKB_00278at 304.214 kb on - strand, within OHPLBJKB_00278at 304.296 kb on + strand, within OHPLBJKB_00278at 304.297 kb on - strand, within OHPLBJKB_00278at 304.297 kb on - strand, within OHPLBJKB_00278at 304.297 kb on - strand, within OHPLBJKB_00278at 304.297 kb on - strand, within OHPLBJKB_00278at 304.300 kb on + strand, within OHPLBJKB_00278at 304.301 kb on - strand, within OHPLBJKB_00278at 304.301 kb on - strand, within OHPLBJKB_00278at 304.456 kb on - strand, within OHPLBJKB_00278at 304.650 kb on - strandat 304.670 kb on - strandat 304.690 kb on + strandat 304.722 kb on - strandat 304.722 kb on - strandat 304.725 kb on + strandat 304.725 kb on + strandat 304.726 kb on - strandat 304.743 kb on - strandat 304.743 kb on - strandat 304.825 kb on + strandat 304.826 kb on - strandat 304.826 kb on - strandat 304.828 kb on + strandat 304.828 kb on + strandat 304.829 kb on - strandat 304.936 kb on - strand, within OHPLBJKB_00279at 304.936 kb on - strand, within OHPLBJKB_00279at 304.960 kb on + strand, within OHPLBJKB_00279at 304.960 kb on + strand, within OHPLBJKB_00279at 304.960 kb on + strand, within OHPLBJKB_00279at 305.015 kb on - strand, within OHPLBJKB_00279at 305.036 kb on + strand, within OHPLBJKB_00279at 305.036 kb on + strand, within OHPLBJKB_00279at 305.036 kb on + strand, within OHPLBJKB_00279at 305.036 kb on + strand, within OHPLBJKB_00279at 305.066 kb on + strand, within OHPLBJKB_00279at 305.067 kb on - strand, within OHPLBJKB_00279at 305.067 kb on - strand, within OHPLBJKB_00279at 305.068 kb on + strand, within OHPLBJKB_00279at 305.140 kb on + strandat 305.140 kb on + strandat 305.141 kb on - strandat 305.141 kb on - strandat 305.141 kb on - strandat 305.142 kb on + strandat 305.142 kb on + strandat 305.143 kb on - strandat 305.143 kb on - strandat 305.143 kb on - strandat 305.191 kb on - strandat 305.233 kb on + strandat 305.233 kb on + strandat 305.234 kb on - strandat 305.234 kb on - strandat 305.234 kb on - strandat 305.274 kb on + strand, within OHPLBJKB_00280at 305.540 kb on + strand, within OHPLBJKB_00280at 305.591 kb on - strand, within OHPLBJKB_00280

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Per-strain Table

Position Strand Gene LocusTag Fraction Phage M13-1
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302,155 + OHPLBJKB_00276 0.86 -1.2
302,158 - OHPLBJKB_00276 0.86 -0.9
302,158 - OHPLBJKB_00276 0.86 -2.0
302,213 + -1.3
302,213 + +0.7
302,214 - +0.0
302,251 + +1.0
302,251 + -2.9
302,252 - -0.8
302,263 + -0.6
302,264 - +0.2
302,303 + +1.0
302,394 - OHPLBJKB_00277 0.16 -0.5
302,544 - OHPLBJKB_00277 0.41 -0.7
302,601 + OHPLBJKB_00277 0.51 -0.6
302,605 + OHPLBJKB_00277 0.51 -1.0
302,791 - OHPLBJKB_00277 0.82 -0.4
302,814 - OHPLBJKB_00277 0.86 +0.3
302,855 - +0.5
302,865 - +1.4
302,865 - +0.8
302,915 + -0.0
303,003 + +1.0
303,006 - -0.4
303,006 - +0.5
303,021 + +1.2
303,021 + -0.6
303,037 - -0.5
303,104 + -0.1
303,105 - -1.2
303,109 + -0.0
303,143 - -1.0
303,143 - +1.0
303,143 - +2.3
303,189 - -1.5
303,279 + OHPLBJKB_00278 0.11 -0.5
303,427 - OHPLBJKB_00278 0.21 +0.3
303,427 - OHPLBJKB_00278 0.21 -2.7
303,512 + OHPLBJKB_00278 0.26 +0.5
303,608 - OHPLBJKB_00278 0.33 -1.4
303,682 - OHPLBJKB_00278 0.38 -1.4
303,731 - OHPLBJKB_00278 0.41 -0.3
303,731 - OHPLBJKB_00278 0.41 +0.7
303,732 + OHPLBJKB_00278 0.41 -1.0
303,732 + OHPLBJKB_00278 0.41 -1.3
303,732 + OHPLBJKB_00278 0.41 +0.0
303,733 - OHPLBJKB_00278 0.41 -1.7
303,856 + OHPLBJKB_00278 0.49 -2.1
303,856 + OHPLBJKB_00278 0.49 +0.4
303,856 + OHPLBJKB_00278 0.49 -0.5
303,857 - OHPLBJKB_00278 0.49 -0.9
303,857 - OHPLBJKB_00278 0.49 -1.8
303,857 - OHPLBJKB_00278 0.49 -1.0
303,863 - OHPLBJKB_00278 0.50 -1.4
303,882 + OHPLBJKB_00278 0.51 -2.0
303,883 - OHPLBJKB_00278 0.51 -1.2
303,883 - OHPLBJKB_00278 0.51 -1.2
303,898 + OHPLBJKB_00278 0.52 -0.1
303,919 + OHPLBJKB_00278 0.54 +0.3
303,920 - OHPLBJKB_00278 0.54 -2.2
303,948 + OHPLBJKB_00278 0.55 -2.2
304,034 - OHPLBJKB_00278 0.61 -1.8
304,034 - OHPLBJKB_00278 0.61 -0.5
304,036 - OHPLBJKB_00278 0.61 -0.3
304,036 - OHPLBJKB_00278 0.61 -2.1
304,214 - OHPLBJKB_00278 0.73 -0.6
304,296 + OHPLBJKB_00278 0.79 +0.7
304,297 - OHPLBJKB_00278 0.79 -0.9
304,297 - OHPLBJKB_00278 0.79 -0.0
304,297 - OHPLBJKB_00278 0.79 -0.9
304,297 - OHPLBJKB_00278 0.79 -1.3
304,300 + OHPLBJKB_00278 0.79 -0.0
304,301 - OHPLBJKB_00278 0.79 -1.0
304,301 - OHPLBJKB_00278 0.79 -0.3
304,456 - OHPLBJKB_00278 0.89 -3.3
304,650 - +0.2
304,670 - +0.4
304,690 + +1.9
304,722 - -0.6
304,722 - -1.4
304,725 + +0.9
304,725 + -0.5
304,726 - -1.0
304,743 - +1.1
304,743 - +0.5
304,825 + -0.4
304,826 - -1.4
304,826 - -1.0
304,828 + -1.8
304,828 + -1.9
304,829 - -0.7
304,936 - OHPLBJKB_00279 0.39 -0.0
304,936 - OHPLBJKB_00279 0.39 +0.6
304,960 + OHPLBJKB_00279 0.46 -0.3
304,960 + OHPLBJKB_00279 0.46 -0.1
304,960 + OHPLBJKB_00279 0.46 +1.5
305,015 - OHPLBJKB_00279 0.63 -0.3
305,036 + OHPLBJKB_00279 0.70 +0.3
305,036 + OHPLBJKB_00279 0.70 -0.7
305,036 + OHPLBJKB_00279 0.70 -0.3
305,036 + OHPLBJKB_00279 0.70 -0.5
305,066 + OHPLBJKB_00279 0.79 -1.5
305,067 - OHPLBJKB_00279 0.79 -1.0
305,067 - OHPLBJKB_00279 0.79 -0.7
305,068 + OHPLBJKB_00279 0.80 -2.5
305,140 + -0.9
305,140 + -0.3
305,141 - -0.6
305,141 - +0.2
305,141 - -1.3
305,142 + +1.3
305,142 + -1.0
305,143 - +0.2
305,143 - -0.2
305,143 - -0.3
305,191 - +0.3
305,233 + +0.5
305,233 + -2.2
305,234 - +0.8
305,234 - +0.2
305,234 - -0.2
305,274 + OHPLBJKB_00280 0.11 -0.9
305,540 + OHPLBJKB_00280 0.43 +0.8
305,591 - OHPLBJKB_00280 0.50 +1.2

Or see this region's nucleotide sequence