Strain Fitness in Escherichia coli ECRC62 around BNILDI_21320

Experiment: Bas05

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas05
4,287,025	-				+0.5
4,287,095	-				+0.8
4,287,095	-				-0.4
4,287,125	-				-0.7
4,287,263	-				-0.4
4,287,263	-				-0.1
4,287,266	+				+0.7
4,287,267	-				-0.3
4,287,274	-				-0.4
4,287,337	+	sdhB	BNILDI_21315	0.10	+0.3
4,287,338	-	sdhB	BNILDI_21315	0.10	+0.6
4,287,534	+	sdhB	BNILDI_21315	0.38	-0.5
4,287,624	-	sdhB	BNILDI_21315	0.50	+0.6
4,287,753	+	sdhB	BNILDI_21315	0.68	+0.7
4,287,914	+				+1.9
4,287,915	-				-0.5
4,287,915	-				-0.5
4,287,959	+				-0.9
4,287,998	+				+0.3
4,288,001	+				-1.6
4,288,002	-				-1.7
4,288,002	-				+1.0
4,288,006	-				-0.4
4,288,356	+	sdhA	BNILDI_21320	0.20	-0.2
4,288,357	-	sdhA	BNILDI_21320	0.20	-0.6
4,288,365	+	sdhA	BNILDI_21320	0.21	-1.6
4,288,366	-	sdhA	BNILDI_21320	0.21	-5.1
4,288,366	-	sdhA	BNILDI_21320	0.21	-2.7
4,288,366	-	sdhA	BNILDI_21320	0.21	-0.7
4,288,700	+	sdhA	BNILDI_21320	0.40	-0.2
4,288,701	-	sdhA	BNILDI_21320	0.40	-1.6
4,289,011	+	sdhA	BNILDI_21320	0.57	-1.5
4,289,012	-	sdhA	BNILDI_21320	0.57	-0.7
4,289,138	+	sdhA	BNILDI_21320	0.65	+1.6
4,289,139	-	sdhA	BNILDI_21320	0.65	+0.2
4,289,143	-	sdhA	BNILDI_21320	0.65	+0.1
4,289,143	-	sdhA	BNILDI_21320	0.65	+0.6
4,289,271	-	sdhA	BNILDI_21320	0.72	-0.1
4,289,420	+	sdhA	BNILDI_21320	0.81	-0.0
4,289,421	-	sdhA	BNILDI_21320	0.81	-1.9
4,289,425	-	sdhA	BNILDI_21320	0.81	-2.2
4,289,497	-	sdhA	BNILDI_21320	0.85	-1.2
4,289,502	+	sdhA	BNILDI_21320	0.85	-0.4
4,289,503	-	sdhA	BNILDI_21320	0.85	-2.0
4,289,503	-	sdhA	BNILDI_21320	0.85	-1.0
4,289,503	-	sdhA	BNILDI_21320	0.85	+0.5
4,289,504	+	sdhA	BNILDI_21320	0.85	+0.3
4,289,505	-	sdhA	BNILDI_21320	0.85	-0.7
4,289,556	-	sdhA	BNILDI_21320	0.88	-0.9
4,289,560	-	sdhA	BNILDI_21320	0.88	-0.8
4,289,574	+	sdhA	BNILDI_21320	0.89	-1.8
4,289,589	+				-0.6
4,289,652	+				-1.4
4,289,653	-				+0.8
4,289,792	-				+0.2
4,289,801	-	sdhD	BNILDI_21325	0.11	+0.7
4,289,977	+	sdhD	BNILDI_21325	0.61	+0.4
4,289,977	+	sdhD	BNILDI_21325	0.61	-0.4
4,289,978	-	sdhD	BNILDI_21325	0.62	+1.3
4,289,978	-	sdhD	BNILDI_21325	0.62	-1.2
4,289,978	-	sdhD	BNILDI_21325	0.62	-0.9
4,290,015	-	sdhD	BNILDI_21325	0.72	+1.3
4,290,016	+	sdhD	BNILDI_21325	0.73	-1.4
4,290,016	+	sdhD	BNILDI_21325	0.73	-0.6
4,290,016	+	sdhD	BNILDI_21325	0.73	-0.9
4,290,017	-	sdhD	BNILDI_21325	0.73	-0.0
4,290,017	-	sdhD	BNILDI_21325	0.73	+0.0
4,290,017	-	sdhD	BNILDI_21325	0.73	-2.2
4,290,017	-	sdhD	BNILDI_21325	0.73	-1.6
4,290,025	+	sdhD	BNILDI_21325	0.75	-2.0
4,290,025	+	sdhD	BNILDI_21325	0.75	-0.2
4,290,026	-	sdhD	BNILDI_21325	0.76	-0.9
4,290,111	-				+0.0
4,290,149	-	sdhC	BNILDI_21330	0.11	-2.7
4,290,149	-	sdhC	BNILDI_21330	0.11	+0.2
4,290,488	+				+1.1
4,290,517	+				-0.5