Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clpA and clpS are separated by 30 nucleotides clpS and yljB are separated by 98 nucleotides yljB and cspD are separated by 149 nucleotides cspD and macB are separated by 72 nucleotides macB and macA overlap by 4 nucleotides
BNILDI_20435: clpA - ATP-dependent Clp protease ATP-binding subunit ClpA, at 4,116,247 to 4,118,523
clpA
BNILDI_20440: clpS - ATP-dependent Clp protease adapter ClpS, at 4,118,554 to 4,118,874
clpS
BNILDI_20445: yljB - Protein YljB, at 4,118,973 to 4,119,047
yljB
BNILDI_20450: cspD - cold shock-like protein CspD, at 4,119,197 to 4,119,421
cspD
BNILDI_20455: macB - macrolide ABC transporter ATP-binding protein/permease MacB, at 4,119,494 to 4,121,440
macB
BNILDI_20460: macA - macrolide transporter subunit MacA, at 4,121,437 to 4,122,534
macA
Position (kb) 4119
4120
4121
4122 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4118.494 kb on + strand at 4118.495 kb on - strand at 4118.572 kb on - strand at 4118.603 kb on + strand, within clpS at 4118.717 kb on + strand, within clpS at 4118.766 kb on - strand, within clpS at 4118.790 kb on + strand, within clpS at 4118.791 kb on - strand, within clpS at 4118.792 kb on + strand, within clpS at 4118.792 kb on + strand, within clpS at 4118.792 kb on + strand, within clpS at 4118.796 kb on + strand, within clpS at 4118.796 kb on + strand, within clpS at 4118.796 kb on + strand, within clpS at 4118.796 kb on + strand, within clpS at 4118.797 kb on - strand, within clpS at 4118.882 kb on + strand at 4118.883 kb on - strand at 4118.934 kb on + strand at 4118.935 kb on - strand at 4118.963 kb on + strand at 4118.964 kb on - strand at 4118.967 kb on + strand at 4118.967 kb on + strand at 4118.967 kb on + strand at 4118.968 kb on - strand at 4118.968 kb on - strand at 4118.968 kb on - strand at 4118.972 kb on - strand at 4118.972 kb on - strand at 4119.023 kb on + strand, within yljB at 4119.048 kb on - strand at 4119.089 kb on + strand at 4119.154 kb on + strand at 4119.155 kb on - strand at 4119.164 kb on + strand at 4119.165 kb on - strand at 4119.171 kb on - strand at 4119.215 kb on - strand at 4119.287 kb on + strand, within cspD at 4119.287 kb on + strand, within cspD at 4119.385 kb on + strand, within cspD at 4119.419 kb on + strand at 4119.420 kb on - strand at 4119.441 kb on - strand at 4119.447 kb on + strand at 4119.516 kb on - strand at 4119.560 kb on + strand at 4119.759 kb on - strand, within macB at 4119.759 kb on - strand, within macB at 4119.759 kb on - strand, within macB at 4119.878 kb on + strand, within macB at 4119.883 kb on + strand, within macB at 4119.883 kb on + strand, within macB at 4119.966 kb on - strand, within macB at 4120.025 kb on - strand, within macB at 4120.052 kb on - strand, within macB at 4120.074 kb on + strand, within macB at 4120.219 kb on + strand, within macB at 4120.219 kb on + strand, within macB at 4120.271 kb on - strand, within macB at 4120.302 kb on + strand, within macB at 4120.302 kb on + strand, within macB at 4120.302 kb on + strand, within macB at 4120.315 kb on - strand, within macB at 4120.360 kb on + strand, within macB at 4120.433 kb on + strand, within macB at 4120.444 kb on - strand, within macB at 4120.508 kb on - strand, within macB at 4120.511 kb on - strand, within macB at 4120.523 kb on - strand, within macB at 4120.523 kb on - strand, within macB at 4120.523 kb on - strand, within macB at 4120.595 kb on - strand, within macB at 4120.603 kb on + strand, within macB at 4120.603 kb on + strand, within macB at 4120.603 kb on + strand, within macB at 4120.856 kb on - strand, within macB at 4121.022 kb on + strand, within macB at 4121.023 kb on - strand, within macB at 4121.104 kb on - strand, within macB at 4121.114 kb on + strand, within macB at 4121.150 kb on + strand, within macB at 4121.151 kb on - strand, within macB at 4121.285 kb on - strand at 4121.346 kb on + strand at 4121.347 kb on - strand at 4121.347 kb on - strand at 4121.347 kb on - strand at 4121.347 kb on - strand at 4121.347 kb on - strand at 4121.347 kb on - strand at 4121.401 kb on - strand at 4121.420 kb on + strand at 4121.523 kb on + strand at 4121.523 kb on + strand at 4121.565 kb on + strand, within macA at 4121.584 kb on - strand, within macA at 4121.585 kb on + strand, within macA at 4121.727 kb on - strand, within macA at 4121.767 kb on + strand, within macA at 4121.879 kb on - strand, within macA at 4121.896 kb on - strand, within macA at 4121.896 kb on - strand, within macA at 4122.021 kb on + strand, within macA at 4122.167 kb on + strand, within macA at 4122.167 kb on + strand, within macA at 4122.167 kb on + strand, within macA at 4122.220 kb on + strand, within macA at 4122.221 kb on - strand, within macA at 4122.250 kb on - strand, within macA at 4122.415 kb on + strand, within macA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 4,118,494 + -0.8 4,118,495 - -0.2 4,118,572 - -0.6 4,118,603 + clpS BNILDI_20440 0.15 -0.7 4,118,717 + clpS BNILDI_20440 0.51 +1.4 4,118,766 - clpS BNILDI_20440 0.66 +0.3 4,118,790 + clpS BNILDI_20440 0.74 -0.0 4,118,791 - clpS BNILDI_20440 0.74 +0.9 4,118,792 + clpS BNILDI_20440 0.74 -0.4 4,118,792 + clpS BNILDI_20440 0.74 -0.7 4,118,792 + clpS BNILDI_20440 0.74 -0.6 4,118,796 + clpS BNILDI_20440 0.75 -0.4 4,118,796 + clpS BNILDI_20440 0.75 +1.5 4,118,796 + clpS BNILDI_20440 0.75 +0.6 4,118,796 + clpS BNILDI_20440 0.75 +0.2 4,118,797 - clpS BNILDI_20440 0.76 +0.9 4,118,882 + -0.3 4,118,883 - +1.0 4,118,934 + -1.3 4,118,935 - -0.3 4,118,963 + -0.4 4,118,964 - -0.2 4,118,967 + -0.5 4,118,967 + +0.4 4,118,967 + +0.1 4,118,968 - -1.7 4,118,968 - -0.6 4,118,968 - +0.4 4,118,972 - +0.5 4,118,972 - -0.6 4,119,023 + yljB BNILDI_20445 0.67 -0.4 4,119,048 - -0.6 4,119,089 + -0.3 4,119,154 + +0.4 4,119,155 - +0.3 4,119,164 + -0.2 4,119,165 - -0.1 4,119,171 - -0.2 4,119,215 - -0.1 4,119,287 + cspD BNILDI_20450 0.40 +1.6 4,119,287 + cspD BNILDI_20450 0.40 -2.7 4,119,385 + cspD BNILDI_20450 0.84 +1.1 4,119,419 + -0.8 4,119,420 - +0.2 4,119,441 - -0.4 4,119,447 + -0.2 4,119,516 - +1.1 4,119,560 + -0.7 4,119,759 - macB BNILDI_20455 0.14 -0.7 4,119,759 - macB BNILDI_20455 0.14 +0.8 4,119,759 - macB BNILDI_20455 0.14 +0.8 4,119,878 + macB BNILDI_20455 0.20 +1.4 4,119,883 + macB BNILDI_20455 0.20 +0.7 4,119,883 + macB BNILDI_20455 0.20 +0.0 4,119,966 - macB BNILDI_20455 0.24 -0.2 4,120,025 - macB BNILDI_20455 0.27 -2.0 4,120,052 - macB BNILDI_20455 0.29 -0.1 4,120,074 + macB BNILDI_20455 0.30 -0.5 4,120,219 + macB BNILDI_20455 0.37 -0.4 4,120,219 + macB BNILDI_20455 0.37 -1.3 4,120,271 - macB BNILDI_20455 0.40 -0.7 4,120,302 + macB BNILDI_20455 0.41 -0.7 4,120,302 + macB BNILDI_20455 0.41 -3.6 4,120,302 + macB BNILDI_20455 0.41 +0.1 4,120,315 - macB BNILDI_20455 0.42 -0.8 4,120,360 + macB BNILDI_20455 0.44 -0.8 4,120,433 + macB BNILDI_20455 0.48 -0.1 4,120,444 - macB BNILDI_20455 0.49 -0.4 4,120,508 - macB BNILDI_20455 0.52 -0.1 4,120,511 - macB BNILDI_20455 0.52 +0.3 4,120,523 - macB BNILDI_20455 0.53 -0.7 4,120,523 - macB BNILDI_20455 0.53 -1.5 4,120,523 - macB BNILDI_20455 0.53 -0.9 4,120,595 - macB BNILDI_20455 0.57 -1.0 4,120,603 + macB BNILDI_20455 0.57 +0.1 4,120,603 + macB BNILDI_20455 0.57 -0.9 4,120,603 + macB BNILDI_20455 0.57 +0.4 4,120,856 - macB BNILDI_20455 0.70 +1.3 4,121,022 + macB BNILDI_20455 0.78 +1.4 4,121,023 - macB BNILDI_20455 0.79 +0.5 4,121,104 - macB BNILDI_20455 0.83 -0.5 4,121,114 + macB BNILDI_20455 0.83 +0.2 4,121,150 + macB BNILDI_20455 0.85 +0.3 4,121,151 - macB BNILDI_20455 0.85 +0.6 4,121,285 - -0.9 4,121,346 + +1.4 4,121,347 - -0.1 4,121,347 - -1.5 4,121,347 - +0.3 4,121,347 - +0.7 4,121,347 - -3.0 4,121,347 - -0.1 4,121,401 - +0.8 4,121,420 + -1.0 4,121,523 + -1.0 4,121,523 + +1.5 4,121,565 + macA BNILDI_20460 0.12 -0.3 4,121,584 - macA BNILDI_20460 0.13 +0.3 4,121,585 + macA BNILDI_20460 0.13 -1.0 4,121,727 - macA BNILDI_20460 0.26 -0.0 4,121,767 + macA BNILDI_20460 0.30 -1.3 4,121,879 - macA BNILDI_20460 0.40 -1.2 4,121,896 - macA BNILDI_20460 0.42 -0.7 4,121,896 - macA BNILDI_20460 0.42 -2.1 4,122,021 + macA BNILDI_20460 0.53 +1.1 4,122,167 + macA BNILDI_20460 0.66 -0.4 4,122,167 + macA BNILDI_20460 0.66 -0.5 4,122,167 + macA BNILDI_20460 0.66 -0.5 4,122,220 + macA BNILDI_20460 0.71 +0.5 4,122,221 - macA BNILDI_20460 0.71 +0.3 4,122,250 - macA BNILDI_20460 0.74 +0.1 4,122,415 + macA BNILDI_20460 0.89 +0.1
Or see this region's nucleotide sequence