Strain Fitness in Escherichia coli ECRC62 around BNILDI_20355

Experiment: Bas05

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas05
4,095,146	+	ycaD	BNILDI_20350	0.44	+0.1
4,095,146	+	ycaD	BNILDI_20350	0.44	-0.3
4,095,147	-	ycaD	BNILDI_20350	0.44	+0.2
4,095,223	+	ycaD	BNILDI_20350	0.51	+1.1
4,095,224	-	ycaD	BNILDI_20350	0.51	-0.1
4,095,384	+	ycaD	BNILDI_20350	0.65	-0.0
4,095,385	-	ycaD	BNILDI_20350	0.65	-2.1
4,095,397	+	ycaD	BNILDI_20350	0.66	-2.1
4,095,400	-	ycaD	BNILDI_20350	0.66	-1.1
4,095,583	-	ycaD	BNILDI_20350	0.83	+0.7
4,095,607	+	ycaD	BNILDI_20350	0.85	-0.6
4,095,615	+	ycaD	BNILDI_20350	0.85	-0.4
4,095,615	+	ycaD	BNILDI_20350	0.85	-0.3
4,095,616	-	ycaD	BNILDI_20350	0.86	-0.1
4,095,616	-	ycaD	BNILDI_20350	0.86	+0.0
4,095,631	+	ycaD	BNILDI_20350	0.87	+1.2
4,095,655	-	ycaD	BNILDI_20350	0.89	-0.1
4,095,674	+				-0.3
4,095,911	-				+0.5
4,095,912	+				-0.7
4,096,036	-				-0.1
4,096,130	-				+0.1
4,096,199	+	ycaC	BNILDI_20355	0.13	-0.0
4,096,219	-	ycaC	BNILDI_20355	0.16	-0.6
4,096,224	+	ycaC	BNILDI_20355	0.17	+0.1
4,096,258	-	ycaC	BNILDI_20355	0.22	-1.6
4,096,261	+	ycaC	BNILDI_20355	0.23	+0.0
4,096,262	-	ycaC	BNILDI_20355	0.23	+0.0
4,096,262	-	ycaC	BNILDI_20355	0.23	-2.0
4,096,319	+	ycaC	BNILDI_20355	0.32	+0.5
4,096,319	+	ycaC	BNILDI_20355	0.32	-0.7
4,096,357	+	ycaC	BNILDI_20355	0.38	+0.5
4,096,357	+	ycaC	BNILDI_20355	0.38	-1.2
4,096,358	-	ycaC	BNILDI_20355	0.38	-0.3
4,096,358	-	ycaC	BNILDI_20355	0.38	+0.2
4,096,378	-	ycaC	BNILDI_20355	0.42	-0.1
4,096,686	+				-0.4
4,096,687	-				+0.7
4,096,687	-				-2.6
4,096,702	-				+0.1
4,096,717	+				-0.4
4,096,780	+				+1.1
4,096,819	+				+0.1
4,096,820	-				+0.8
4,096,840	-				-0.7
4,096,898	-	dmsC	BNILDI_20360	0.14	-0.1
4,096,905	+	dmsC	BNILDI_20360	0.15	+0.4
4,096,975	+	dmsC	BNILDI_20360	0.23	+0.3
4,096,975	+	dmsC	BNILDI_20360	0.23	-2.6
4,097,012	+	dmsC	BNILDI_20360	0.27	-0.4
4,097,013	-	dmsC	BNILDI_20360	0.27	-0.3
4,097,018	+	dmsC	BNILDI_20360	0.28	-0.4
4,097,018	+	dmsC	BNILDI_20360	0.28	-0.1
4,097,019	-	dmsC	BNILDI_20360	0.28	-1.3
4,097,019	-	dmsC	BNILDI_20360	0.28	-0.6
4,097,019	-	dmsC	BNILDI_20360	0.28	-1.3
4,097,141	-	dmsC	BNILDI_20360	0.42	-1.6
4,097,231	+	dmsC	BNILDI_20360	0.52	+0.0
4,097,233	+	dmsC	BNILDI_20360	0.53	+0.5
4,097,233	+	dmsC	BNILDI_20360	0.53	-1.9
4,097,234	-	dmsC	BNILDI_20360	0.53	+0.4
4,097,297	+	dmsC	BNILDI_20360	0.60	-0.7
4,097,298	-	dmsC	BNILDI_20360	0.60	+0.1
4,097,352	+	dmsC	BNILDI_20360	0.66	-0.4
4,097,424	-	dmsC	BNILDI_20360	0.75	-0.4
4,097,424	-	dmsC	BNILDI_20360	0.75	+0.2
4,097,457	-	dmsC	BNILDI_20360	0.78	-0.6
4,097,722	-	dmsB	BNILDI_20365	0.13	-1.9