Strain Fitness in Escherichia coli ECRC62 around BNILDI_19915

Experiment: Bas05

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas05
3,994,844	-	rlmI	BNILDI_19905	0.51	+0.2
3,994,919	-	rlmI	BNILDI_19905	0.57	+0.6
3,995,086	-	rlmI	BNILDI_19905	0.71	+0.1
3,995,152	-	rlmI	BNILDI_19905	0.77	-0.7
3,995,184	+	rlmI	BNILDI_19905	0.80	-2.2
3,995,184	+	rlmI	BNILDI_19905	0.80	+0.6
3,995,185	-	rlmI	BNILDI_19905	0.80	+0.7
3,995,191	-	rlmI	BNILDI_19905	0.80	+3.3
3,995,191	-	rlmI	BNILDI_19905	0.80	-0.2
3,995,274	-	rlmI	BNILDI_19905	0.87	+0.4
3,995,370	+				-2.2
3,995,445	+				+0.3
3,995,446	-				-0.6
3,995,447	+				+0.8
3,995,447	+				+0.5
3,995,448	-				-0.6
3,995,448	-				+0.6
3,995,456	+				+1.8
3,995,479	-				+1.3
3,995,528	+	hspQ	BNILDI_19910	0.15	+0.1
3,995,528	+	hspQ	BNILDI_19910	0.15	+1.6
3,995,673	+	hspQ	BNILDI_19910	0.61	+1.8
3,995,674	-	hspQ	BNILDI_19910	0.61	+0.0
3,995,674	-	hspQ	BNILDI_19910	0.61	+0.3
3,995,696	+	hspQ	BNILDI_19910	0.68	-0.0
3,995,697	-	hspQ	BNILDI_19910	0.69	+1.7
3,995,843	-				+0.4
3,995,984	+	yccU	BNILDI_19915	0.35	-0.4
3,996,147	+	yccU	BNILDI_19915	0.74	+1.5
3,996,151	+	yccU	BNILDI_19915	0.75	-1.7
3,996,152	-	yccU	BNILDI_19915	0.75	-1.9
3,996,225	+				-0.5
3,996,255	+				-0.8
3,996,315	-				+0.1
3,996,347	-				+0.2
3,996,352	+				-1.4
3,996,352	+				-1.1
3,996,353	-				-3.2
3,996,354	+				-1.2
3,996,359	+				-0.9
3,996,359	+				+0.1
3,996,363	-				+1.3
3,996,363	-				-0.9
3,996,397	-				-0.7
3,996,422	+				+0.2
3,996,423	-				-0.7
3,996,423	-				-1.8
3,996,423	-				-0.9
3,996,461	+				-0.0
3,996,462	-				-0.5
3,996,462	-				-1.9
3,996,603	-	yccT	BNILDI_19920	0.27	-1.2
3,996,655	+	yccT	BNILDI_19920	0.34	+0.1
3,996,655	+	yccT	BNILDI_19920	0.34	+0.7
3,996,655	+	yccT	BNILDI_19920	0.34	+2.2
3,996,655	+	yccT	BNILDI_19920	0.34	-1.8
3,996,656	-	yccT	BNILDI_19920	0.35	+0.1
3,996,657	+	yccT	BNILDI_19920	0.35	+0.8
3,996,940	-	yccT	BNILDI_19920	0.77	-1.8
3,996,972	+	yccT	BNILDI_19920	0.82	+0.3
3,996,972	+	yccT	BNILDI_19920	0.82	+0.1
3,997,016	-	yccT	BNILDI_19920	0.89	-0.7
3,997,126	-				-0.1
3,997,138	+				-0.3
3,997,138	+				-0.2
3,997,139	-				-0.0
3,997,146	+				-0.3
3,997,151	+				+0.1
3,997,167	+				+0.3
3,997,168	-				+0.1
3,997,168	-				+0.7
3,997,180	-				-1.5