Strain Fitness in Escherichia coli ECRC62 around BNILDI_17675

Experiment: Bas05

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas05
3,555,924	+	mddA	BNILDI_17660	0.56	+0.7
3,555,925	-	mddA	BNILDI_17660	0.57	+0.8
3,556,101	+				-1.2
3,556,102	-				+0.2
3,556,102	-				+0.0
3,556,367	+	ydcZ	BNILDI_17665	0.49	+0.0
3,556,367	+	ydcZ	BNILDI_17665	0.49	+0.3
3,556,368	-	ydcZ	BNILDI_17665	0.49	+1.3
3,556,368	-	ydcZ	BNILDI_17665	0.49	-0.2
3,556,368	-	ydcZ	BNILDI_17665	0.49	+0.3
3,556,368	-	ydcZ	BNILDI_17665	0.49	+1.6
3,556,369	+	ydcZ	BNILDI_17665	0.50	+1.2
3,556,370	-	ydcZ	BNILDI_17665	0.50	-0.1
3,556,442	+	ydcZ	BNILDI_17665	0.66	+0.5
3,556,752	+	ydcY	BNILDI_17670	0.67	-1.2
3,556,764	-	ydcY	BNILDI_17670	0.72	-0.3
3,556,830	-				+0.6
3,556,830	-				-1.8
3,556,877	-				+0.5
3,556,877	-				-0.5
3,556,878	+				-0.6
3,556,879	-				+0.7
3,556,879	-				-0.1
3,556,879	-				-1.8
3,556,910	-				+0.9
3,557,070	+	ortT	BNILDI_17675	0.89	-0.8
3,557,245	+				+0.8
3,557,246	-				+0.8
3,557,248	+				+0.6
3,557,248	+				+1.8
3,557,250	+				+0.2
3,557,250	+				+0.4
3,557,256	+				-0.1
3,557,257	-				+0.5
3,557,257	-				-0.4
3,557,257	-				+0.4
3,557,305	+				-1.2
3,557,305	+				-0.6
3,557,308	+				-0.8
3,557,314	+				+1.7
3,557,348	+				-1.5
3,557,381	+				+0.7
3,557,403	+				+1.4
3,557,404	-				+0.2
3,557,404	-				-0.1
3,557,449	+				-0.2
3,557,455	+				+0.5
3,557,470	+				-0.0
3,557,470	+				-0.3
3,557,470	+				-0.1
3,557,510	-				+0.1
3,557,534	+				+0.4
3,557,534	+				+0.1
3,557,535	-				+0.4
3,557,613	-				-1.4
3,557,763	+	patD	BNILDI_17680	0.20	+0.1
3,557,764	-	patD	BNILDI_17680	0.20	+0.0
3,557,793	+	patD	BNILDI_17680	0.22	+0.1
3,557,822	-	patD	BNILDI_17680	0.24	+0.2
3,557,825	-	patD	BNILDI_17680	0.25	+1.6
3,557,825	-	patD	BNILDI_17680	0.25	-0.2
3,557,825	-	patD	BNILDI_17680	0.25	-0.3
3,557,825	-	patD	BNILDI_17680	0.25	-0.1
3,557,825	-	patD	BNILDI_17680	0.25	-0.2
3,557,827	+	patD	BNILDI_17680	0.25	+0.5
3,557,828	-	patD	BNILDI_17680	0.25	+0.3
3,557,934	+	patD	BNILDI_17680	0.32	+1.3
3,558,059	+	patD	BNILDI_17680	0.41	+1.1
3,558,079	+	patD	BNILDI_17680	0.42	-3.2
3,558,080	-	patD	BNILDI_17680	0.42	-0.5