Strain Fitness in Escherichia coli ECRC62 around BNILDI_15560

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_15555 and BNILDI_15560 are separated by 88 nucleotidesBNILDI_15560 and BNILDI_15565 are separated by 406 nucleotides BNILDI_15555: BNILDI_15555 - glycosyl hydrolase, at 3,125,843 to 3,127,711 _15555 BNILDI_15560: BNILDI_15560 - TrmB family transcriptional regulator, at 3,127,800 to 3,128,609 _15560 BNILDI_15565: BNILDI_15565 - sugar ABC transporter ATP-binding protein, at 3,129,016 to 3,130,143 _15565 Position (kb) 3127 3128 3129Strain fitness (log2 ratio) -2 -1 0 1at 3126.953 kb on - strand, within BNILDI_15555at 3127.199 kb on - strand, within BNILDI_15555at 3127.589 kb on + strandat 3128.404 kb on + strand, within BNILDI_15560at 3128.435 kb on + strand, within BNILDI_15560at 3128.523 kb on - strand, within BNILDI_15560at 3128.523 kb on - strand, within BNILDI_15560at 3128.609 kb on + strandat 3128.846 kb on + strandat 3129.296 kb on - strand, within BNILDI_15565at 3129.365 kb on + strand, within BNILDI_15565at 3129.401 kb on - strand, within BNILDI_15565at 3129.469 kb on - strand, within BNILDI_15565at 3129.517 kb on - strand, within BNILDI_15565at 3129.560 kb on + strand, within BNILDI_15565at 3129.560 kb on + strand, within BNILDI_15565

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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3,126,953 - BNILDI_15555 0.59 +1.7
3,127,199 - BNILDI_15555 0.73 -0.0
3,127,589 + +0.8
3,128,404 + BNILDI_15560 0.75 -0.6
3,128,435 + BNILDI_15560 0.78 -0.6
3,128,523 - BNILDI_15560 0.89 -0.3
3,128,523 - BNILDI_15560 0.89 -1.7
3,128,609 + -0.8
3,128,846 + -2.0
3,129,296 - BNILDI_15565 0.25 -0.1
3,129,365 + BNILDI_15565 0.31 +0.7
3,129,401 - BNILDI_15565 0.34 +1.1
3,129,469 - BNILDI_15565 0.40 +0.3
3,129,517 - BNILDI_15565 0.44 -0.2
3,129,560 + BNILDI_15565 0.48 -0.1
3,129,560 + BNILDI_15565 0.48 +0.5

Or see this region's nucleotide sequence