Strain Fitness in Escherichia coli ECRC62 around BNILDI_14685

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_14675 and BNILDI_14680 overlap by 4 nucleotidesBNILDI_14680 and BNILDI_14685 are separated by 191 nucleotidesBNILDI_14685 and galE are separated by 30 nucleotides BNILDI_14675: BNILDI_14675 - polysaccharide biosynthesis protein, at 2,964,903 to 2,965,559 _14675 BNILDI_14680: BNILDI_14680 - glycosyl transferase, at 2,965,556 to 2,966,326 _14680 BNILDI_14685: BNILDI_14685 - glycosyltransferase family 1 protein, at 2,966,518 to 2,967,636 _14685 BNILDI_14690: galE - UDP-glucose 4-epimerase GalE, at 2,967,667 to 2,968,686 galE Position (kb) 2966 2967 2968Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2966.558 kb on + strandat 2966.807 kb on - strand, within BNILDI_14685at 2967.235 kb on - strand, within BNILDI_14685at 2967.235 kb on - strand, within BNILDI_14685at 2967.714 kb on + strandat 2967.719 kb on + strandat 2967.748 kb on - strandat 2968.182 kb on + strand, within galEat 2968.275 kb on + strand, within galEat 2968.275 kb on + strand, within galEat 2968.275 kb on + strand, within galEat 2968.276 kb on - strand, within galEat 2968.277 kb on + strand, within galEat 2968.278 kb on - strand, within galEat 2968.290 kb on + strand, within galEat 2968.290 kb on + strand, within galEat 2968.293 kb on - strand, within galEat 2968.363 kb on + strand, within galEat 2968.366 kb on - strand, within galEat 2968.441 kb on + strand, within galEat 2968.442 kb on - strand, within galEat 2968.442 kb on - strand, within galEat 2968.443 kb on + strand, within galE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,966,558 + +0.6
2,966,807 - BNILDI_14685 0.26 -0.8
2,967,235 - BNILDI_14685 0.64 -3.7
2,967,235 - BNILDI_14685 0.64 -0.4
2,967,714 + -4.6
2,967,719 + -1.8
2,967,748 - -0.1
2,968,182 + galE BNILDI_14690 0.50 -2.5
2,968,275 + galE BNILDI_14690 0.60 -3.5
2,968,275 + galE BNILDI_14690 0.60 -3.5
2,968,275 + galE BNILDI_14690 0.60 -4.4
2,968,276 - galE BNILDI_14690 0.60 +1.0
2,968,277 + galE BNILDI_14690 0.60 -3.1
2,968,278 - galE BNILDI_14690 0.60 -1.6
2,968,290 + galE BNILDI_14690 0.61 -3.2
2,968,290 + galE BNILDI_14690 0.61 -1.4
2,968,293 - galE BNILDI_14690 0.61 -2.4
2,968,363 + galE BNILDI_14690 0.68 -3.7
2,968,366 - galE BNILDI_14690 0.69 -4.7
2,968,441 + galE BNILDI_14690 0.76 -2.7
2,968,442 - galE BNILDI_14690 0.76 -2.5
2,968,442 - galE BNILDI_14690 0.76 -1.2
2,968,443 + galE BNILDI_14690 0.76 -3.2

Or see this region's nucleotide sequence