Strain Fitness in Escherichia coli ECRC62 around BNILDI_14675

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwzx and BNILDI_14675 overlap by 11 nucleotidesBNILDI_14675 and BNILDI_14680 overlap by 4 nucleotidesBNILDI_14680 and BNILDI_14685 are separated by 191 nucleotides BNILDI_14670: wzx - O23 family O-antigen flippase, at 2,963,708 to 2,964,913 wzx BNILDI_14675: BNILDI_14675 - polysaccharide biosynthesis protein, at 2,964,903 to 2,965,559 _14675 BNILDI_14680: BNILDI_14680 - glycosyl transferase, at 2,965,556 to 2,966,326 _14680 BNILDI_14685: BNILDI_14685 - glycosyltransferase family 1 protein, at 2,966,518 to 2,967,636 _14685 Position (kb) 2964 2965 2966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2964.842 kb on - strandat 2965.099 kb on - strand, within BNILDI_14675at 2966.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,964,842 - -2.7
2,965,099 - BNILDI_14675 0.30 -4.0
2,966,558 + +0.6

Or see this region's nucleotide sequence