Strain Fitness in Escherichia coli ECRC62 around BNILDI_14320

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_14320 and BNILDI_14325 are separated by 6 nucleotidesBNILDI_14325 and BNILDI_14330 overlap by 4 nucleotides BNILDI_14320: BNILDI_14320 - Hydroxyethylthiazole kinase, at 2,891,113 to 2,891,499 _14320 BNILDI_14325: BNILDI_14325 - Hydroxyethylthiazole kinase, at 2,891,506 to 2,891,901 _14325 BNILDI_14330: BNILDI_14330 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,891,898 to 2,892,698 _14330 Position (kb) 2891 2892Strain fitness (log2 ratio) -2 -1 0 1 2at 2890.114 kb on - strandat 2890.117 kb on - strandat 2890.201 kb on + strandat 2890.395 kb on - strandat 2890.459 kb on - strandat 2890.460 kb on + strandat 2890.460 kb on + strandat 2890.461 kb on - strandat 2890.605 kb on - strandat 2890.662 kb on - strandat 2890.662 kb on - strandat 2890.665 kb on + strandat 2890.665 kb on + strandat 2890.665 kb on + strandat 2890.665 kb on + strandat 2890.665 kb on + strandat 2890.665 kb on + strandat 2890.666 kb on - strandat 2890.666 kb on - strandat 2890.673 kb on + strandat 2890.811 kb on + strandat 2890.812 kb on - strandat 2891.024 kb on - strandat 2891.030 kb on - strandat 2891.113 kb on - strandat 2891.113 kb on - strandat 2891.113 kb on - strandat 2891.113 kb on - strandat 2891.221 kb on - strand, within BNILDI_14320at 2891.320 kb on - strand, within BNILDI_14320at 2891.638 kb on + strand, within BNILDI_14325at 2891.638 kb on + strand, within BNILDI_14325at 2891.638 kb on + strand, within BNILDI_14325at 2891.761 kb on - strand, within BNILDI_14325at 2892.009 kb on - strand, within BNILDI_14330at 2892.134 kb on + strand, within BNILDI_14330at 2892.219 kb on - strand, within BNILDI_14330at 2892.266 kb on + strand, within BNILDI_14330

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,890,114 - -0.5
2,890,117 - -0.3
2,890,201 + -0.1
2,890,395 - -1.5
2,890,459 - -0.1
2,890,460 + -2.1
2,890,460 + -0.7
2,890,461 - -0.8
2,890,605 - +1.3
2,890,662 - +1.1
2,890,662 - +0.6
2,890,665 + -1.1
2,890,665 + +0.4
2,890,665 + +0.6
2,890,665 + -0.8
2,890,665 + -0.4
2,890,665 + +0.3
2,890,666 - +0.1
2,890,666 - +2.7
2,890,673 + +0.6
2,890,811 + +1.5
2,890,812 - -0.3
2,891,024 - +0.5
2,891,030 - -0.1
2,891,113 - -0.3
2,891,113 - -1.1
2,891,113 - +1.0
2,891,113 - +1.6
2,891,221 - BNILDI_14320 0.28 -0.9
2,891,320 - BNILDI_14320 0.53 -0.9
2,891,638 + BNILDI_14325 0.33 +0.3
2,891,638 + BNILDI_14325 0.33 +0.7
2,891,638 + BNILDI_14325 0.33 -0.3
2,891,761 - BNILDI_14325 0.64 -0.4
2,892,009 - BNILDI_14330 0.14 -0.4
2,892,134 + BNILDI_14330 0.29 -0.5
2,892,219 - BNILDI_14330 0.40 -0.4
2,892,266 + BNILDI_14330 0.46 +0.9

Or see this region's nucleotide sequence