Strain Fitness in Escherichia coli ECRC62 around BNILDI_13450

Experiment: Bas05

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntelaD and BNILDI_13455 are separated by 190 nucleotides BNILDI_13450: elaD - ElaD/SseL family deubiquitinase, at 2,696,708 to 2,697,925 elaD BNILDI_13455: BNILDI_13455 - ribonuclease BN, at 2,698,116 to 2,699,051 _13455 Position (kb) 2696 2697 2698Strain fitness (log2 ratio) -1 0 1 2at 2695.761 kb on - strandat 2696.122 kb on - strandat 2696.901 kb on - strand, within elaDat 2697.127 kb on + strand, within elaDat 2697.400 kb on - strand, within elaDat 2698.016 kb on - strandat 2698.061 kb on - strandat 2698.108 kb on - strandat 2698.236 kb on + strand, within BNILDI_13455at 2698.283 kb on + strand, within BNILDI_13455at 2698.290 kb on - strand, within BNILDI_13455at 2698.290 kb on - strand, within BNILDI_13455at 2698.290 kb on - strand, within BNILDI_13455at 2698.324 kb on - strand, within BNILDI_13455at 2698.500 kb on + strand, within BNILDI_13455at 2698.501 kb on - strand, within BNILDI_13455at 2698.571 kb on + strand, within BNILDI_13455at 2698.587 kb on - strand, within BNILDI_13455at 2698.759 kb on + strand, within BNILDI_13455at 2698.760 kb on - strand, within BNILDI_13455at 2698.887 kb on - strand, within BNILDI_13455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
remove
2,695,761 - +0.0
2,696,122 - +1.5
2,696,901 - elaD BNILDI_13450 0.16 -0.5
2,697,127 + elaD BNILDI_13450 0.34 -1.0
2,697,400 - elaD BNILDI_13450 0.57 -0.7
2,698,016 - -0.2
2,698,061 - -0.3
2,698,108 - -0.7
2,698,236 + BNILDI_13455 0.13 +0.4
2,698,283 + BNILDI_13455 0.18 +0.4
2,698,290 - BNILDI_13455 0.19 -0.9
2,698,290 - BNILDI_13455 0.19 -0.0
2,698,290 - BNILDI_13455 0.19 -0.1
2,698,324 - BNILDI_13455 0.22 -0.4
2,698,500 + BNILDI_13455 0.41 -1.4
2,698,501 - BNILDI_13455 0.41 +0.1
2,698,571 + BNILDI_13455 0.49 +0.4
2,698,587 - BNILDI_13455 0.50 +0.4
2,698,759 + BNILDI_13455 0.69 +0.3
2,698,760 - BNILDI_13455 0.69 -0.4
2,698,887 - BNILDI_13455 0.82 +2.1

Or see this region's nucleotide sequence