Strain Fitness in Escherichia coli ECRC62 around BNILDI_13070

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntintS and Arg_trna are separated by 161 nucleotidesArg_trna and yfdC are separated by 75 nucleotides BNILDI_13065: intS - prophage integrase IntS, at 2,617,298 to 2,618,455 intS BNILDI_13070: Arg_trna - tRNA-Arg(cct), at 2,618,617 to 2,618,691 _trna BNILDI_13075: yfdC - Inner membrane protein YfdC, at 2,618,767 to 2,619,699 yfdC Position (kb) 2618 2619Strain fitness (log2 ratio) -2 -1 0 1 2at 2617.758 kb on - strand, within intSat 2617.918 kb on + strand, within intSat 2617.918 kb on + strand, within intSat 2617.920 kb on + strand, within intSat 2617.921 kb on - strand, within intSat 2617.921 kb on - strand, within intSat 2618.081 kb on + strand, within intSat 2618.082 kb on - strand, within intSat 2618.121 kb on + strand, within intSat 2618.191 kb on + strand, within intSat 2618.261 kb on - strand, within intSat 2618.363 kb on + strandat 2618.364 kb on - strandat 2618.374 kb on - strandat 2618.374 kb on - strandat 2618.374 kb on - strandat 2618.670 kb on - strand, within Arg_trnaat 2618.705 kb on + strandat 2618.733 kb on + strandat 2618.769 kb on - strandat 2619.050 kb on - strand, within yfdCat 2619.050 kb on - strand, within yfdCat 2619.050 kb on - strand, within yfdCat 2619.052 kb on - strand, within yfdCat 2619.052 kb on - strand, within yfdCat 2619.052 kb on - strand, within yfdCat 2619.099 kb on + strand, within yfdCat 2619.214 kb on - strand, within yfdCat 2619.214 kb on - strand, within yfdCat 2619.219 kb on + strand, within yfdCat 2619.219 kb on + strand, within yfdCat 2619.219 kb on + strand, within yfdCat 2619.220 kb on - strand, within yfdCat 2619.220 kb on - strand, within yfdCat 2619.221 kb on + strand, within yfdCat 2619.221 kb on + strand, within yfdCat 2619.243 kb on + strand, within yfdCat 2619.244 kb on - strand, within yfdCat 2619.262 kb on - strand, within yfdCat 2619.292 kb on - strand, within yfdCat 2619.296 kb on - strand, within yfdCat 2619.365 kb on - strand, within yfdCat 2619.382 kb on + strand, within yfdCat 2619.394 kb on - strand, within yfdCat 2619.405 kb on + strand, within yfdCat 2619.406 kb on - strand, within yfdCat 2619.406 kb on - strand, within yfdCat 2619.463 kb on + strand, within yfdCat 2619.616 kb on + strandat 2619.616 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,617,758 - intS BNILDI_13065 0.40 +1.5
2,617,918 + intS BNILDI_13065 0.54 +0.1
2,617,918 + intS BNILDI_13065 0.54 +1.2
2,617,920 + intS BNILDI_13065 0.54 -0.5
2,617,921 - intS BNILDI_13065 0.54 -1.2
2,617,921 - intS BNILDI_13065 0.54 -0.0
2,618,081 + intS BNILDI_13065 0.68 -1.2
2,618,082 - intS BNILDI_13065 0.68 +0.7
2,618,121 + intS BNILDI_13065 0.71 +2.0
2,618,191 + intS BNILDI_13065 0.77 -0.9
2,618,261 - intS BNILDI_13065 0.83 -0.5
2,618,363 + +1.0
2,618,364 - +0.2
2,618,374 - +0.1
2,618,374 - +1.0
2,618,374 - +0.2
2,618,670 - Arg_trna BNILDI_13070 0.71 -2.5
2,618,705 + -0.9
2,618,733 + -0.3
2,618,769 - +1.6
2,619,050 - yfdC BNILDI_13075 0.30 +0.2
2,619,050 - yfdC BNILDI_13075 0.30 +0.5
2,619,050 - yfdC BNILDI_13075 0.30 +1.1
2,619,052 - yfdC BNILDI_13075 0.31 +1.8
2,619,052 - yfdC BNILDI_13075 0.31 +2.1
2,619,052 - yfdC BNILDI_13075 0.31 +0.6
2,619,099 + yfdC BNILDI_13075 0.36 -0.4
2,619,214 - yfdC BNILDI_13075 0.48 +1.9
2,619,214 - yfdC BNILDI_13075 0.48 -0.1
2,619,219 + yfdC BNILDI_13075 0.48 -0.8
2,619,219 + yfdC BNILDI_13075 0.48 +0.5
2,619,219 + yfdC BNILDI_13075 0.48 +0.9
2,619,220 - yfdC BNILDI_13075 0.49 +0.3
2,619,220 - yfdC BNILDI_13075 0.49 -0.4
2,619,221 + yfdC BNILDI_13075 0.49 -0.3
2,619,221 + yfdC BNILDI_13075 0.49 +0.2
2,619,243 + yfdC BNILDI_13075 0.51 -0.4
2,619,244 - yfdC BNILDI_13075 0.51 +1.1
2,619,262 - yfdC BNILDI_13075 0.53 +0.6
2,619,292 - yfdC BNILDI_13075 0.56 -0.0
2,619,296 - yfdC BNILDI_13075 0.57 -0.1
2,619,365 - yfdC BNILDI_13075 0.64 +2.0
2,619,382 + yfdC BNILDI_13075 0.66 -0.7
2,619,394 - yfdC BNILDI_13075 0.67 +0.1
2,619,405 + yfdC BNILDI_13075 0.68 -0.1
2,619,406 - yfdC BNILDI_13075 0.68 -0.8
2,619,406 - yfdC BNILDI_13075 0.68 +0.9
2,619,463 + yfdC BNILDI_13075 0.75 -0.3
2,619,616 + +0.4
2,619,616 + +0.6

Or see this region's nucleotide sequence