Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt intS and Arg_trna are separated by 161 nucleotides Arg_trna and yfdC are separated by 75 nucleotides
BNILDI_13065: intS - prophage integrase IntS, at 2,617,298 to 2,618,455
intS
BNILDI_13070: Arg_trna - tRNA-Arg(cct), at 2,618,617 to 2,618,691
_trna
BNILDI_13075: yfdC - Inner membrane protein YfdC, at 2,618,767 to 2,619,699
yfdC
Position (kb)
2618
2619 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2617.758 kb on - strand, within intS at 2617.918 kb on + strand, within intS at 2617.918 kb on + strand, within intS at 2617.920 kb on + strand, within intS at 2617.921 kb on - strand, within intS at 2617.921 kb on - strand, within intS at 2618.081 kb on + strand, within intS at 2618.082 kb on - strand, within intS at 2618.121 kb on + strand, within intS at 2618.191 kb on + strand, within intS at 2618.261 kb on - strand, within intS at 2618.363 kb on + strand at 2618.364 kb on - strand at 2618.374 kb on - strand at 2618.374 kb on - strand at 2618.374 kb on - strand at 2618.670 kb on - strand, within Arg_trna at 2618.705 kb on + strand at 2618.733 kb on + strand at 2618.769 kb on - strand at 2619.050 kb on - strand, within yfdC at 2619.050 kb on - strand, within yfdC at 2619.050 kb on - strand, within yfdC at 2619.052 kb on - strand, within yfdC at 2619.052 kb on - strand, within yfdC at 2619.052 kb on - strand, within yfdC at 2619.099 kb on + strand, within yfdC at 2619.214 kb on - strand, within yfdC at 2619.214 kb on - strand, within yfdC at 2619.219 kb on + strand, within yfdC at 2619.219 kb on + strand, within yfdC at 2619.219 kb on + strand, within yfdC at 2619.220 kb on - strand, within yfdC at 2619.220 kb on - strand, within yfdC at 2619.221 kb on + strand, within yfdC at 2619.221 kb on + strand, within yfdC at 2619.243 kb on + strand, within yfdC at 2619.244 kb on - strand, within yfdC at 2619.262 kb on - strand, within yfdC at 2619.292 kb on - strand, within yfdC at 2619.296 kb on - strand, within yfdC at 2619.365 kb on - strand, within yfdC at 2619.382 kb on + strand, within yfdC at 2619.394 kb on - strand, within yfdC at 2619.405 kb on + strand, within yfdC at 2619.406 kb on - strand, within yfdC at 2619.406 kb on - strand, within yfdC at 2619.463 kb on + strand, within yfdC at 2619.616 kb on + strand at 2619.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 2,617,758 - intS BNILDI_13065 0.40 +1.5 2,617,918 + intS BNILDI_13065 0.54 +0.1 2,617,918 + intS BNILDI_13065 0.54 +1.2 2,617,920 + intS BNILDI_13065 0.54 -0.5 2,617,921 - intS BNILDI_13065 0.54 -1.2 2,617,921 - intS BNILDI_13065 0.54 -0.0 2,618,081 + intS BNILDI_13065 0.68 -1.2 2,618,082 - intS BNILDI_13065 0.68 +0.7 2,618,121 + intS BNILDI_13065 0.71 +2.0 2,618,191 + intS BNILDI_13065 0.77 -0.9 2,618,261 - intS BNILDI_13065 0.83 -0.5 2,618,363 + +1.0 2,618,364 - +0.2 2,618,374 - +0.1 2,618,374 - +1.0 2,618,374 - +0.2 2,618,670 - Arg_trna BNILDI_13070 0.71 -2.5 2,618,705 + -0.9 2,618,733 + -0.3 2,618,769 - +1.6 2,619,050 - yfdC BNILDI_13075 0.30 +0.2 2,619,050 - yfdC BNILDI_13075 0.30 +0.5 2,619,050 - yfdC BNILDI_13075 0.30 +1.1 2,619,052 - yfdC BNILDI_13075 0.31 +1.8 2,619,052 - yfdC BNILDI_13075 0.31 +2.1 2,619,052 - yfdC BNILDI_13075 0.31 +0.6 2,619,099 + yfdC BNILDI_13075 0.36 -0.4 2,619,214 - yfdC BNILDI_13075 0.48 +1.9 2,619,214 - yfdC BNILDI_13075 0.48 -0.1 2,619,219 + yfdC BNILDI_13075 0.48 -0.8 2,619,219 + yfdC BNILDI_13075 0.48 +0.5 2,619,219 + yfdC BNILDI_13075 0.48 +0.9 2,619,220 - yfdC BNILDI_13075 0.49 +0.3 2,619,220 - yfdC BNILDI_13075 0.49 -0.4 2,619,221 + yfdC BNILDI_13075 0.49 -0.3 2,619,221 + yfdC BNILDI_13075 0.49 +0.2 2,619,243 + yfdC BNILDI_13075 0.51 -0.4 2,619,244 - yfdC BNILDI_13075 0.51 +1.1 2,619,262 - yfdC BNILDI_13075 0.53 +0.6 2,619,292 - yfdC BNILDI_13075 0.56 -0.0 2,619,296 - yfdC BNILDI_13075 0.57 -0.1 2,619,365 - yfdC BNILDI_13075 0.64 +2.0 2,619,382 + yfdC BNILDI_13075 0.66 -0.7 2,619,394 - yfdC BNILDI_13075 0.67 +0.1 2,619,405 + yfdC BNILDI_13075 0.68 -0.1 2,619,406 - yfdC BNILDI_13075 0.68 -0.8 2,619,406 - yfdC BNILDI_13075 0.68 +0.9 2,619,463 + yfdC BNILDI_13075 0.75 -0.3 2,619,616 + +0.4 2,619,616 + +0.6
Or see this region's nucleotide sequence