Strain Fitness in Escherichia coli ECRC62 around BNILDI_13050

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_13045 and BNILDI_13050 are separated by 62 nucleotidesBNILDI_13050 and gtrB overlap by 4 nucleotidesgtrB and BNILDI_13060 overlap by 4 nucleotides BNILDI_13045: BNILDI_13045 - Bifunctional tail protein, at 2,612,140 to 2,614,380 _13045 BNILDI_13050: BNILDI_13050 - Glucosyl transferase GtrII, at 2,614,443 to 2,615,873 _13050 BNILDI_13055: gtrB - bactoprenol glucosyl transferase, at 2,615,870 to 2,616,787 gtrB BNILDI_13060: BNILDI_13060 - bactoprenol glucosyl transferase, at 2,616,784 to 2,617,146 _13060 Position (kb) 2614 2615 2616Strain fitness (log2 ratio) -1 0 1 2at 2613.495 kb on + strand, within BNILDI_13045at 2613.708 kb on - strand, within BNILDI_13045at 2613.710 kb on - strand, within BNILDI_13045at 2614.006 kb on - strand, within BNILDI_13045at 2614.023 kb on + strand, within BNILDI_13045at 2614.059 kb on + strand, within BNILDI_13045at 2614.118 kb on + strand, within BNILDI_13045at 2614.479 kb on + strandat 2614.603 kb on - strand, within BNILDI_13050at 2615.528 kb on - strand, within BNILDI_13050at 2615.559 kb on + strand, within BNILDI_13050at 2615.656 kb on - strand, within BNILDI_13050at 2615.805 kb on + strandat 2615.919 kb on + strandat 2615.924 kb on - strandat 2616.080 kb on + strand, within gtrBat 2616.081 kb on - strand, within gtrBat 2616.280 kb on + strand, within gtrBat 2616.357 kb on - strand, within gtrBat 2616.357 kb on - strand, within gtrBat 2616.374 kb on - strand, within gtrBat 2616.375 kb on + strand, within gtrBat 2616.376 kb on - strand, within gtrBat 2616.376 kb on - strand, within gtrBat 2616.376 kb on - strand, within gtrBat 2616.446 kb on - strand, within gtrBat 2616.574 kb on + strand, within gtrBat 2616.608 kb on + strand, within gtrBat 2616.628 kb on + strand, within gtrBat 2616.637 kb on + strand, within gtrBat 2616.637 kb on + strand, within gtrBat 2616.694 kb on - strand, within gtrBat 2616.720 kb on - strandat 2616.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,613,495 + BNILDI_13045 0.60 +0.9
2,613,708 - BNILDI_13045 0.70 -1.3
2,613,710 - BNILDI_13045 0.70 +0.1
2,614,006 - BNILDI_13045 0.83 +0.7
2,614,023 + BNILDI_13045 0.84 -0.1
2,614,059 + BNILDI_13045 0.86 +1.8
2,614,118 + BNILDI_13045 0.88 -1.0
2,614,479 + -0.4
2,614,603 - BNILDI_13050 0.11 -0.5
2,615,528 - BNILDI_13050 0.76 -0.2
2,615,559 + BNILDI_13050 0.78 -1.5
2,615,656 - BNILDI_13050 0.85 -1.0
2,615,805 + -0.3
2,615,919 + -0.5
2,615,924 - -1.4
2,616,080 + gtrB BNILDI_13055 0.23 -0.7
2,616,081 - gtrB BNILDI_13055 0.23 -1.7
2,616,280 + gtrB BNILDI_13055 0.45 -0.3
2,616,357 - gtrB BNILDI_13055 0.53 -0.6
2,616,357 - gtrB BNILDI_13055 0.53 +0.2
2,616,374 - gtrB BNILDI_13055 0.55 -0.8
2,616,375 + gtrB BNILDI_13055 0.55 +0.0
2,616,376 - gtrB BNILDI_13055 0.55 -0.3
2,616,376 - gtrB BNILDI_13055 0.55 -1.3
2,616,376 - gtrB BNILDI_13055 0.55 -0.5
2,616,446 - gtrB BNILDI_13055 0.63 -1.3
2,616,574 + gtrB BNILDI_13055 0.77 +0.0
2,616,608 + gtrB BNILDI_13055 0.80 -1.3
2,616,628 + gtrB BNILDI_13055 0.83 -0.7
2,616,637 + gtrB BNILDI_13055 0.84 -1.3
2,616,637 + gtrB BNILDI_13055 0.84 -0.6
2,616,694 - gtrB BNILDI_13055 0.90 +0.9
2,616,720 - -1.7
2,616,780 - -0.8

Or see this region's nucleotide sequence