Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_12575 and BNILDI_12580 are separated by 288 nucleotides BNILDI_12580 and BNILDI_12585 are separated by 38 nucleotides BNILDI_12585 and BNILDI_12590 are separated by 138 nucleotides BNILDI_12590 and BNILDI_12595 are separated by 17 nucleotides BNILDI_12595 and BNILDI_12600 are separated by 139 nucleotides
BNILDI_12575: BNILDI_12575 - hypothetical protein, at 2,524,018 to 2,526,198
_12575
BNILDI_12580: BNILDI_12580 - No significant similarities, at 2,526,487 to 2,526,717
_12580
BNILDI_12585: BNILDI_12585 - hypothetical protein, at 2,526,756 to 2,527,043
_12585
BNILDI_12590: BNILDI_12590 - hypothetical protein, at 2,527,182 to 2,527,724
_12590
BNILDI_12595: BNILDI_12595 - hypothetical protein, at 2,527,742 to 2,528,005
_12595
BNILDI_12600: BNILDI_12600 - AlpA family transcriptional regulator, at 2,528,145 to 2,528,336
_12600
Position (kb)
2527
2528 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2526.201 kb on + strand at 2526.330 kb on + strand at 2526.485 kb on - strand at 2526.620 kb on + strand, within BNILDI_12580 at 2526.621 kb on - strand, within BNILDI_12580 at 2526.621 kb on - strand, within BNILDI_12580 at 2526.648 kb on + strand, within BNILDI_12580 at 2526.649 kb on - strand, within BNILDI_12580 at 2526.652 kb on + strand, within BNILDI_12580 at 2526.652 kb on + strand, within BNILDI_12580 at 2526.653 kb on - strand, within BNILDI_12580 at 2526.705 kb on + strand at 2526.742 kb on + strand at 2526.743 kb on - strand at 2526.743 kb on - strand at 2526.743 kb on - strand at 2526.743 kb on - strand at 2526.743 kb on - strand at 2526.777 kb on - strand at 2526.777 kb on - strand at 2526.798 kb on + strand, within BNILDI_12585 at 2526.988 kb on - strand, within BNILDI_12585 at 2526.988 kb on - strand, within BNILDI_12585 at 2527.071 kb on - strand at 2527.072 kb on + strand at 2527.073 kb on - strand at 2527.073 kb on - strand at 2527.157 kb on + strand at 2527.433 kb on - strand, within BNILDI_12590 at 2528.108 kb on - strand at 2528.557 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 2,526,201 + +0.9 2,526,330 + +0.6 2,526,485 - -0.5 2,526,620 + BNILDI_12580 0.58 -0.1 2,526,621 - BNILDI_12580 0.58 +0.3 2,526,621 - BNILDI_12580 0.58 +1.6 2,526,648 + BNILDI_12580 0.70 +0.7 2,526,649 - BNILDI_12580 0.70 -0.1 2,526,652 + BNILDI_12580 0.71 -1.3 2,526,652 + BNILDI_12580 0.71 -0.4 2,526,653 - BNILDI_12580 0.72 +0.6 2,526,705 + +0.2 2,526,742 + -0.7 2,526,743 - +0.0 2,526,743 - -0.1 2,526,743 - -0.0 2,526,743 - +0.2 2,526,743 - +2.8 2,526,777 - -0.3 2,526,777 - +1.1 2,526,798 + BNILDI_12585 0.15 -0.3 2,526,988 - BNILDI_12585 0.81 -1.7 2,526,988 - BNILDI_12585 0.81 +0.3 2,527,071 - +0.3 2,527,072 + -0.6 2,527,073 - +0.6 2,527,073 - +1.1 2,527,157 + -0.6 2,527,433 - BNILDI_12590 0.46 -1.4 2,528,108 - -3.2 2,528,557 + +0.6
Or see this region's nucleotide sequence