Strain Fitness in Escherichia coli ECRC62 around BNILDI_12590

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_12575 and BNILDI_12580 are separated by 288 nucleotidesBNILDI_12580 and BNILDI_12585 are separated by 38 nucleotidesBNILDI_12585 and BNILDI_12590 are separated by 138 nucleotidesBNILDI_12590 and BNILDI_12595 are separated by 17 nucleotidesBNILDI_12595 and BNILDI_12600 are separated by 139 nucleotides BNILDI_12575: BNILDI_12575 - hypothetical protein, at 2,524,018 to 2,526,198 _12575 BNILDI_12580: BNILDI_12580 - No significant similarities, at 2,526,487 to 2,526,717 _12580 BNILDI_12585: BNILDI_12585 - hypothetical protein, at 2,526,756 to 2,527,043 _12585 BNILDI_12590: BNILDI_12590 - hypothetical protein, at 2,527,182 to 2,527,724 _12590 BNILDI_12595: BNILDI_12595 - hypothetical protein, at 2,527,742 to 2,528,005 _12595 BNILDI_12600: BNILDI_12600 - AlpA family transcriptional regulator, at 2,528,145 to 2,528,336 _12600 Position (kb) 2527 2528Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2526.201 kb on + strandat 2526.330 kb on + strandat 2526.485 kb on - strandat 2526.620 kb on + strand, within BNILDI_12580at 2526.621 kb on - strand, within BNILDI_12580at 2526.621 kb on - strand, within BNILDI_12580at 2526.648 kb on + strand, within BNILDI_12580at 2526.649 kb on - strand, within BNILDI_12580at 2526.652 kb on + strand, within BNILDI_12580at 2526.652 kb on + strand, within BNILDI_12580at 2526.653 kb on - strand, within BNILDI_12580at 2526.705 kb on + strandat 2526.742 kb on + strandat 2526.743 kb on - strandat 2526.743 kb on - strandat 2526.743 kb on - strandat 2526.743 kb on - strandat 2526.743 kb on - strandat 2526.777 kb on - strandat 2526.777 kb on - strandat 2526.798 kb on + strand, within BNILDI_12585at 2526.988 kb on - strand, within BNILDI_12585at 2526.988 kb on - strand, within BNILDI_12585at 2527.071 kb on - strandat 2527.072 kb on + strandat 2527.073 kb on - strandat 2527.073 kb on - strandat 2527.157 kb on + strandat 2527.433 kb on - strand, within BNILDI_12590at 2528.108 kb on - strandat 2528.557 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,526,201 + +0.9
2,526,330 + +0.6
2,526,485 - -0.5
2,526,620 + BNILDI_12580 0.58 -0.1
2,526,621 - BNILDI_12580 0.58 +0.3
2,526,621 - BNILDI_12580 0.58 +1.6
2,526,648 + BNILDI_12580 0.70 +0.7
2,526,649 - BNILDI_12580 0.70 -0.1
2,526,652 + BNILDI_12580 0.71 -1.3
2,526,652 + BNILDI_12580 0.71 -0.4
2,526,653 - BNILDI_12580 0.72 +0.6
2,526,705 + +0.2
2,526,742 + -0.7
2,526,743 - +0.0
2,526,743 - -0.1
2,526,743 - -0.0
2,526,743 - +0.2
2,526,743 - +2.8
2,526,777 - -0.3
2,526,777 - +1.1
2,526,798 + BNILDI_12585 0.15 -0.3
2,526,988 - BNILDI_12585 0.81 -1.7
2,526,988 - BNILDI_12585 0.81 +0.3
2,527,071 - +0.3
2,527,072 + -0.6
2,527,073 - +0.6
2,527,073 - +1.1
2,527,157 + -0.6
2,527,433 - BNILDI_12590 0.46 -1.4
2,528,108 - -3.2
2,528,557 + +0.6

Or see this region's nucleotide sequence