Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_11525 and BNILDI_11530 are separated by 67 nucleotides BNILDI_11530 and dksA overlap by 1 nucleotides dksA and BNILDI_11540 overlap by 4 nucleotides BNILDI_11540 and dam overlap by 4 nucleotides dam and BNILDI_11550 overlap by 4 nucleotides
BNILDI_11525: BNILDI_11525 - Protein ORFc in retron Ec67, at 2,318,832 to 2,319,173
_11525
BNILDI_11530: BNILDI_11530 - DUF2732 domain-containing protein, at 2,319,241 to 2,319,474
_11530
BNILDI_11535: dksA - Prokaryotic dksA/traR C4-type zinc finger, at 2,319,474 to 2,319,701
dksA
BNILDI_11540: BNILDI_11540 - Protein ORFd in retron Ec67, at 2,319,698 to 2,320,000
_11540
BNILDI_11545: dam - Retron Ec67 DNA adenine methylase, at 2,319,997 to 2,320,854
dam
BNILDI_11550: BNILDI_11550 - replication endonuclease, at 2,320,851 to 2,322,893
_11550
Position (kb)
2319
2320
2321 Strain fitness (log2 ratio)
-2
-1
0
1 at 2319.298 kb on - strand, within BNILDI_11530 at 2319.530 kb on + strand, within dksA at 2319.644 kb on + strand, within dksA at 2319.698 kb on - strand at 2319.740 kb on - strand, within BNILDI_11540 at 2319.975 kb on - strand at 2320.207 kb on - strand, within dam at 2320.259 kb on - strand, within dam at 2320.279 kb on - strand, within dam at 2320.319 kb on - strand, within dam at 2320.328 kb on - strand, within dam at 2320.471 kb on - strand, within dam at 2320.705 kb on + strand, within dam at 2320.705 kb on + strand, within dam at 2320.807 kb on + strand at 2320.845 kb on - strand at 2320.887 kb on - strand at 2320.999 kb on - strand at 2321.064 kb on + strand, within BNILDI_11550 at 2321.231 kb on + strand, within BNILDI_11550 at 2321.232 kb on - strand, within BNILDI_11550 at 2321.268 kb on + strand, within BNILDI_11550 at 2321.268 kb on + strand, within BNILDI_11550 at 2321.323 kb on + strand, within BNILDI_11550 at 2321.323 kb on + strand, within BNILDI_11550 at 2321.323 kb on + strand, within BNILDI_11550 at 2321.324 kb on - strand, within BNILDI_11550 at 2321.338 kb on + strand, within BNILDI_11550 at 2321.450 kb on + strand, within BNILDI_11550 at 2321.456 kb on + strand, within BNILDI_11550 at 2321.456 kb on + strand, within BNILDI_11550 at 2321.457 kb on - strand, within BNILDI_11550 at 2321.457 kb on - strand, within BNILDI_11550 at 2321.457 kb on - strand, within BNILDI_11550 at 2321.625 kb on + strand, within BNILDI_11550 at 2321.655 kb on - strand, within BNILDI_11550 at 2321.805 kb on - strand, within BNILDI_11550
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 2,319,298 - BNILDI_11530 0.24 +0.7 2,319,530 + dksA BNILDI_11535 0.25 -0.0 2,319,644 + dksA BNILDI_11535 0.75 -0.1 2,319,698 - +1.3 2,319,740 - BNILDI_11540 0.14 -0.4 2,319,975 - -0.7 2,320,207 - dam BNILDI_11545 0.24 -1.6 2,320,259 - dam BNILDI_11545 0.31 -0.3 2,320,279 - dam BNILDI_11545 0.33 -1.8 2,320,319 - dam BNILDI_11545 0.38 -0.4 2,320,328 - dam BNILDI_11545 0.39 +1.6 2,320,471 - dam BNILDI_11545 0.55 -1.0 2,320,705 + dam BNILDI_11545 0.83 +0.1 2,320,705 + dam BNILDI_11545 0.83 -0.8 2,320,807 + -0.7 2,320,845 - +1.5 2,320,887 - -0.9 2,320,999 - +0.2 2,321,064 + BNILDI_11550 0.10 +0.2 2,321,231 + BNILDI_11550 0.19 -0.2 2,321,232 - BNILDI_11550 0.19 +0.2 2,321,268 + BNILDI_11550 0.20 +0.0 2,321,268 + BNILDI_11550 0.20 +0.5 2,321,323 + BNILDI_11550 0.23 -0.5 2,321,323 + BNILDI_11550 0.23 -2.0 2,321,323 + BNILDI_11550 0.23 +0.0 2,321,324 - BNILDI_11550 0.23 +0.4 2,321,338 + BNILDI_11550 0.24 -0.3 2,321,450 + BNILDI_11550 0.29 +0.6 2,321,456 + BNILDI_11550 0.30 -2.6 2,321,456 + BNILDI_11550 0.30 +0.5 2,321,457 - BNILDI_11550 0.30 -0.8 2,321,457 - BNILDI_11550 0.30 +0.4 2,321,457 - BNILDI_11550 0.30 -0.7 2,321,625 + BNILDI_11550 0.38 -0.7 2,321,655 - BNILDI_11550 0.39 +0.2 2,321,805 - BNILDI_11550 0.47 +0.4
Or see this region's nucleotide sequence