Strain Fitness in Escherichia coli ECRC62 around BNILDI_11545

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_11525 and BNILDI_11530 are separated by 67 nucleotidesBNILDI_11530 and dksA overlap by 1 nucleotidesdksA and BNILDI_11540 overlap by 4 nucleotidesBNILDI_11540 and dam overlap by 4 nucleotidesdam and BNILDI_11550 overlap by 4 nucleotides BNILDI_11525: BNILDI_11525 - Protein ORFc in retron Ec67, at 2,318,832 to 2,319,173 _11525 BNILDI_11530: BNILDI_11530 - DUF2732 domain-containing protein, at 2,319,241 to 2,319,474 _11530 BNILDI_11535: dksA - Prokaryotic dksA/traR C4-type zinc finger, at 2,319,474 to 2,319,701 dksA BNILDI_11540: BNILDI_11540 - Protein ORFd in retron Ec67, at 2,319,698 to 2,320,000 _11540 BNILDI_11545: dam - Retron Ec67 DNA adenine methylase, at 2,319,997 to 2,320,854 dam BNILDI_11550: BNILDI_11550 - replication endonuclease, at 2,320,851 to 2,322,893 _11550 Position (kb) 2319 2320 2321Strain fitness (log2 ratio) -2 -1 0 1at 2319.298 kb on - strand, within BNILDI_11530at 2319.530 kb on + strand, within dksAat 2319.644 kb on + strand, within dksAat 2319.698 kb on - strandat 2319.740 kb on - strand, within BNILDI_11540at 2319.975 kb on - strandat 2320.207 kb on - strand, within damat 2320.259 kb on - strand, within damat 2320.279 kb on - strand, within damat 2320.319 kb on - strand, within damat 2320.328 kb on - strand, within damat 2320.471 kb on - strand, within damat 2320.705 kb on + strand, within damat 2320.705 kb on + strand, within damat 2320.807 kb on + strandat 2320.845 kb on - strandat 2320.887 kb on - strandat 2320.999 kb on - strandat 2321.064 kb on + strand, within BNILDI_11550at 2321.231 kb on + strand, within BNILDI_11550at 2321.232 kb on - strand, within BNILDI_11550at 2321.268 kb on + strand, within BNILDI_11550at 2321.268 kb on + strand, within BNILDI_11550at 2321.323 kb on + strand, within BNILDI_11550at 2321.323 kb on + strand, within BNILDI_11550at 2321.323 kb on + strand, within BNILDI_11550at 2321.324 kb on - strand, within BNILDI_11550at 2321.338 kb on + strand, within BNILDI_11550at 2321.450 kb on + strand, within BNILDI_11550at 2321.456 kb on + strand, within BNILDI_11550at 2321.456 kb on + strand, within BNILDI_11550at 2321.457 kb on - strand, within BNILDI_11550at 2321.457 kb on - strand, within BNILDI_11550at 2321.457 kb on - strand, within BNILDI_11550at 2321.625 kb on + strand, within BNILDI_11550at 2321.655 kb on - strand, within BNILDI_11550at 2321.805 kb on - strand, within BNILDI_11550

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,319,298 - BNILDI_11530 0.24 +0.7
2,319,530 + dksA BNILDI_11535 0.25 -0.0
2,319,644 + dksA BNILDI_11535 0.75 -0.1
2,319,698 - +1.3
2,319,740 - BNILDI_11540 0.14 -0.4
2,319,975 - -0.7
2,320,207 - dam BNILDI_11545 0.24 -1.6
2,320,259 - dam BNILDI_11545 0.31 -0.3
2,320,279 - dam BNILDI_11545 0.33 -1.8
2,320,319 - dam BNILDI_11545 0.38 -0.4
2,320,328 - dam BNILDI_11545 0.39 +1.6
2,320,471 - dam BNILDI_11545 0.55 -1.0
2,320,705 + dam BNILDI_11545 0.83 +0.1
2,320,705 + dam BNILDI_11545 0.83 -0.8
2,320,807 + -0.7
2,320,845 - +1.5
2,320,887 - -0.9
2,320,999 - +0.2
2,321,064 + BNILDI_11550 0.10 +0.2
2,321,231 + BNILDI_11550 0.19 -0.2
2,321,232 - BNILDI_11550 0.19 +0.2
2,321,268 + BNILDI_11550 0.20 +0.0
2,321,268 + BNILDI_11550 0.20 +0.5
2,321,323 + BNILDI_11550 0.23 -0.5
2,321,323 + BNILDI_11550 0.23 -2.0
2,321,323 + BNILDI_11550 0.23 +0.0
2,321,324 - BNILDI_11550 0.23 +0.4
2,321,338 + BNILDI_11550 0.24 -0.3
2,321,450 + BNILDI_11550 0.29 +0.6
2,321,456 + BNILDI_11550 0.30 -2.6
2,321,456 + BNILDI_11550 0.30 +0.5
2,321,457 - BNILDI_11550 0.30 -0.8
2,321,457 - BNILDI_11550 0.30 +0.4
2,321,457 - BNILDI_11550 0.30 -0.7
2,321,625 + BNILDI_11550 0.38 -0.7
2,321,655 - BNILDI_11550 0.39 +0.2
2,321,805 - BNILDI_11550 0.47 +0.4

Or see this region's nucleotide sequence