Strain Fitness in Escherichia coli ECRC62 around BNILDI_11370

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_11365 and BNILDI_11370 are separated by 281 nucleotidesBNILDI_11370 and BNILDI_11375 are separated by 20 nucleotidesBNILDI_11375 and xerD are separated by 295 nucleotides BNILDI_11365: BNILDI_11365 - DUF6387 domain-containing protein, at 2,289,961 to 2,290,806 _11365 BNILDI_11370: BNILDI_11370 - dipicolinate synthase, at 2,291,088 to 2,291,294 _11370 BNILDI_11375: BNILDI_11375 - hypothetical protein, at 2,291,315 to 2,291,614 _11375 BNILDI_11380: xerD - integrase, at 2,291,910 to 2,293,112 xerD Position (kb) 2291 2292Strain fitness (log2 ratio) -2 -1 0 1at 2290.189 kb on + strand, within BNILDI_11365at 2290.189 kb on + strand, within BNILDI_11365at 2290.275 kb on + strand, within BNILDI_11365at 2290.323 kb on - strand, within BNILDI_11365at 2290.360 kb on - strand, within BNILDI_11365at 2290.550 kb on + strand, within BNILDI_11365at 2290.551 kb on - strand, within BNILDI_11365at 2290.551 kb on - strand, within BNILDI_11365at 2290.554 kb on + strand, within BNILDI_11365at 2290.554 kb on + strand, within BNILDI_11365at 2290.555 kb on - strand, within BNILDI_11365at 2290.555 kb on - strand, within BNILDI_11365at 2290.625 kb on + strand, within BNILDI_11365at 2290.625 kb on + strand, within BNILDI_11365at 2290.625 kb on + strand, within BNILDI_11365at 2290.626 kb on - strand, within BNILDI_11365at 2290.629 kb on + strand, within BNILDI_11365at 2290.629 kb on + strand, within BNILDI_11365at 2290.629 kb on + strand, within BNILDI_11365at 2290.629 kb on + strand, within BNILDI_11365at 2290.630 kb on - strand, within BNILDI_11365at 2290.630 kb on - strand, within BNILDI_11365at 2290.681 kb on - strand, within BNILDI_11365at 2290.739 kb on - strandat 2290.756 kb on - strandat 2290.895 kb on - strandat 2290.918 kb on + strandat 2290.920 kb on + strandat 2290.999 kb on + strandat 2290.999 kb on + strandat 2291.052 kb on + strandat 2291.052 kb on + strandat 2291.163 kb on + strand, within BNILDI_11370at 2291.183 kb on + strand, within BNILDI_11370at 2291.997 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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2,290,189 + BNILDI_11365 0.27 -0.8
2,290,189 + BNILDI_11365 0.27 -1.1
2,290,275 + BNILDI_11365 0.37 -1.2
2,290,323 - BNILDI_11365 0.43 +0.6
2,290,360 - BNILDI_11365 0.47 +0.2
2,290,550 + BNILDI_11365 0.70 -0.1
2,290,551 - BNILDI_11365 0.70 +0.7
2,290,551 - BNILDI_11365 0.70 -1.1
2,290,554 + BNILDI_11365 0.70 -0.1
2,290,554 + BNILDI_11365 0.70 +0.2
2,290,555 - BNILDI_11365 0.70 +0.4
2,290,555 - BNILDI_11365 0.70 +0.4
2,290,625 + BNILDI_11365 0.78 -1.7
2,290,625 + BNILDI_11365 0.78 +0.7
2,290,625 + BNILDI_11365 0.78 +0.9
2,290,626 - BNILDI_11365 0.79 -0.0
2,290,629 + BNILDI_11365 0.79 -0.2
2,290,629 + BNILDI_11365 0.79 +0.3
2,290,629 + BNILDI_11365 0.79 -0.9
2,290,629 + BNILDI_11365 0.79 -0.7
2,290,630 - BNILDI_11365 0.79 +0.5
2,290,630 - BNILDI_11365 0.79 +0.2
2,290,681 - BNILDI_11365 0.85 -0.2
2,290,739 - +0.0
2,290,756 - +0.0
2,290,895 - -0.9
2,290,918 + -0.8
2,290,920 + -0.3
2,290,999 + +0.4
2,290,999 + +0.5
2,291,052 + +0.1
2,291,052 + +1.4
2,291,163 + BNILDI_11370 0.36 -0.9
2,291,183 + BNILDI_11370 0.46 -0.4
2,291,997 + -2.5

Or see this region's nucleotide sequence