Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_11365 and BNILDI_11370 are separated by 281 nucleotides BNILDI_11370 and BNILDI_11375 are separated by 20 nucleotides BNILDI_11375 and xerD are separated by 295 nucleotides
BNILDI_11365: BNILDI_11365 - DUF6387 domain-containing protein, at 2,289,961 to 2,290,806
_11365
BNILDI_11370: BNILDI_11370 - dipicolinate synthase, at 2,291,088 to 2,291,294
_11370
BNILDI_11375: BNILDI_11375 - hypothetical protein, at 2,291,315 to 2,291,614
_11375
BNILDI_11380: xerD - integrase, at 2,291,910 to 2,293,112
xerD
Position (kb)
2291
2292 Strain fitness (log2 ratio)
-2
-1
0
1 at 2290.189 kb on + strand, within BNILDI_11365 at 2290.189 kb on + strand, within BNILDI_11365 at 2290.275 kb on + strand, within BNILDI_11365 at 2290.323 kb on - strand, within BNILDI_11365 at 2290.360 kb on - strand, within BNILDI_11365 at 2290.550 kb on + strand, within BNILDI_11365 at 2290.551 kb on - strand, within BNILDI_11365 at 2290.551 kb on - strand, within BNILDI_11365 at 2290.554 kb on + strand, within BNILDI_11365 at 2290.554 kb on + strand, within BNILDI_11365 at 2290.555 kb on - strand, within BNILDI_11365 at 2290.555 kb on - strand, within BNILDI_11365 at 2290.625 kb on + strand, within BNILDI_11365 at 2290.625 kb on + strand, within BNILDI_11365 at 2290.625 kb on + strand, within BNILDI_11365 at 2290.626 kb on - strand, within BNILDI_11365 at 2290.629 kb on + strand, within BNILDI_11365 at 2290.629 kb on + strand, within BNILDI_11365 at 2290.629 kb on + strand, within BNILDI_11365 at 2290.629 kb on + strand, within BNILDI_11365 at 2290.630 kb on - strand, within BNILDI_11365 at 2290.630 kb on - strand, within BNILDI_11365 at 2290.681 kb on - strand, within BNILDI_11365 at 2290.739 kb on - strand at 2290.756 kb on - strand at 2290.895 kb on - strand at 2290.918 kb on + strand at 2290.920 kb on + strand at 2290.999 kb on + strand at 2290.999 kb on + strand at 2291.052 kb on + strand at 2291.052 kb on + strand at 2291.163 kb on + strand, within BNILDI_11370 at 2291.183 kb on + strand, within BNILDI_11370 at 2291.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 2,290,189 + BNILDI_11365 0.27 -0.8 2,290,189 + BNILDI_11365 0.27 -1.1 2,290,275 + BNILDI_11365 0.37 -1.2 2,290,323 - BNILDI_11365 0.43 +0.6 2,290,360 - BNILDI_11365 0.47 +0.2 2,290,550 + BNILDI_11365 0.70 -0.1 2,290,551 - BNILDI_11365 0.70 +0.7 2,290,551 - BNILDI_11365 0.70 -1.1 2,290,554 + BNILDI_11365 0.70 -0.1 2,290,554 + BNILDI_11365 0.70 +0.2 2,290,555 - BNILDI_11365 0.70 +0.4 2,290,555 - BNILDI_11365 0.70 +0.4 2,290,625 + BNILDI_11365 0.78 -1.7 2,290,625 + BNILDI_11365 0.78 +0.7 2,290,625 + BNILDI_11365 0.78 +0.9 2,290,626 - BNILDI_11365 0.79 -0.0 2,290,629 + BNILDI_11365 0.79 -0.2 2,290,629 + BNILDI_11365 0.79 +0.3 2,290,629 + BNILDI_11365 0.79 -0.9 2,290,629 + BNILDI_11365 0.79 -0.7 2,290,630 - BNILDI_11365 0.79 +0.5 2,290,630 - BNILDI_11365 0.79 +0.2 2,290,681 - BNILDI_11365 0.85 -0.2 2,290,739 - +0.0 2,290,756 - +0.0 2,290,895 - -0.9 2,290,918 + -0.8 2,290,920 + -0.3 2,290,999 + +0.4 2,290,999 + +0.5 2,291,052 + +0.1 2,291,052 + +1.4 2,291,163 + BNILDI_11370 0.36 -0.9 2,291,183 + BNILDI_11370 0.46 -0.4 2,291,997 + -2.5
Or see this region's nucleotide sequence