Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt loiP and tkt are separated by 277 nucleotides tkt and cmtB are separated by 313 nucleotides cmtB and cmtA are separated by 27 nucleotides
BNILDI_09770: loiP - metalloprotease LoiP, at 1,965,817 to 1,966,575
loiP
BNILDI_09775: tkt - transketolase, at 1,966,853 to 1,968,844
tkt
BNILDI_09780: cmtB - PTS mannitol transporter subunit IIA, at 1,969,158 to 1,969,601
cmtB
BNILDI_09785: cmtA - PTS mannitol transporter subunit IICB, at 1,969,629 to 1,971,017
cmtA
Position (kb) 1966
1967
1968
1969 Strain fitness (log2 ratio) -1
0
1
2 at 1966.111 kb on + strand, within loiP at 1966.129 kb on - strand, within loiP at 1966.224 kb on + strand, within loiP at 1966.224 kb on + strand, within loiP at 1966.224 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.296 kb on - strand, within loiP at 1966.296 kb on - strand, within loiP at 1966.296 kb on - strand, within loiP at 1966.326 kb on + strand, within loiP at 1966.350 kb on + strand, within loiP at 1966.350 kb on + strand, within loiP at 1966.351 kb on - strand, within loiP at 1966.351 kb on - strand, within loiP at 1966.351 kb on - strand, within loiP at 1966.351 kb on - strand, within loiP at 1966.370 kb on + strand, within loiP at 1966.513 kb on - strand at 1966.559 kb on - strand at 1966.653 kb on - strand at 1966.680 kb on - strand at 1966.741 kb on + strand at 1966.864 kb on + strand at 1966.882 kb on + strand at 1967.067 kb on - strand, within tkt at 1967.137 kb on + strand, within tkt at 1967.294 kb on + strand, within tkt at 1967.301 kb on - strand, within tkt at 1967.693 kb on + strand, within tkt at 1968.062 kb on + strand, within tkt at 1968.320 kb on - strand, within tkt at 1968.684 kb on + strand at 1968.705 kb on - strand at 1968.717 kb on - strand at 1968.842 kb on + strand at 1968.847 kb on - strand at 1968.975 kb on - strand at 1969.310 kb on + strand, within cmtB at 1969.327 kb on - strand, within cmtB at 1969.511 kb on - strand, within cmtB at 1969.743 kb on - strand at 1969.800 kb on - strand, within cmtA at 1969.830 kb on - strand, within cmtA at 1969.830 kb on - strand, within cmtA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 1,966,111 + loiP BNILDI_09770 0.39 -0.6 1,966,129 - loiP BNILDI_09770 0.41 -0.2 1,966,224 + loiP BNILDI_09770 0.54 +0.4 1,966,224 + loiP BNILDI_09770 0.54 -0.2 1,966,224 + loiP BNILDI_09770 0.54 -0.1 1,966,295 + loiP BNILDI_09770 0.63 -0.3 1,966,295 + loiP BNILDI_09770 0.63 -0.4 1,966,295 + loiP BNILDI_09770 0.63 -0.6 1,966,295 + loiP BNILDI_09770 0.63 +0.6 1,966,295 + loiP BNILDI_09770 0.63 -0.7 1,966,296 - loiP BNILDI_09770 0.63 -1.0 1,966,296 - loiP BNILDI_09770 0.63 +0.7 1,966,296 - loiP BNILDI_09770 0.63 +1.0 1,966,326 + loiP BNILDI_09770 0.67 -0.0 1,966,350 + loiP BNILDI_09770 0.70 +1.2 1,966,350 + loiP BNILDI_09770 0.70 -0.8 1,966,351 - loiP BNILDI_09770 0.70 +0.1 1,966,351 - loiP BNILDI_09770 0.70 +0.7 1,966,351 - loiP BNILDI_09770 0.70 -0.2 1,966,351 - loiP BNILDI_09770 0.70 +1.9 1,966,370 + loiP BNILDI_09770 0.73 -0.4 1,966,513 - -0.4 1,966,559 - -1.4 1,966,653 - +0.4 1,966,680 - +0.1 1,966,741 + -0.6 1,966,864 + +0.4 1,966,882 + -1.1 1,967,067 - tkt BNILDI_09775 0.11 -1.0 1,967,137 + tkt BNILDI_09775 0.14 +0.3 1,967,294 + tkt BNILDI_09775 0.22 -0.8 1,967,301 - tkt BNILDI_09775 0.22 +1.4 1,967,693 + tkt BNILDI_09775 0.42 -1.3 1,968,062 + tkt BNILDI_09775 0.61 -1.0 1,968,320 - tkt BNILDI_09775 0.74 -0.2 1,968,684 + -0.4 1,968,705 - -1.5 1,968,717 - +0.0 1,968,842 + -0.3 1,968,847 - +1.0 1,968,975 - +0.2 1,969,310 + cmtB BNILDI_09780 0.34 +0.1 1,969,327 - cmtB BNILDI_09780 0.38 -0.6 1,969,511 - cmtB BNILDI_09780 0.80 +1.0 1,969,743 - -1.3 1,969,800 - cmtA BNILDI_09785 0.12 -0.8 1,969,830 - cmtA BNILDI_09785 0.14 -0.4 1,969,830 - cmtA BNILDI_09785 0.14 +0.1
Or see this region's nucleotide sequence