Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_09580 and BNILDI_09585 are separated by 44 nucleotides BNILDI_09585 and BNILDI_09590 are separated by 304 nucleotides BNILDI_09590 and tnp-IS1 are separated by 44 nucleotides
BNILDI_09580: BNILDI_09580 - hypothetical protein, at 1,931,378 to 1,931,914
_09580
BNILDI_09585: BNILDI_09585 - hypothetical protein, at 1,931,959 to 1,933,182
_09585
BNILDI_09590: BNILDI_09590 - IS1 family transposase, at 1,933,487 to 1,933,864
_09590
BNILDI_09595: tnp-IS1 - IS1 family transposase, at 1,933,909 to 1,934,184
tnp-IS1
Position (kb)
1931
1932
1933
1934 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1930.961 kb on - strand at 1931.003 kb on + strand at 1931.016 kb on + strand at 1931.016 kb on + strand at 1931.016 kb on + strand at 1931.089 kb on - strand at 1931.183 kb on - strand at 1931.183 kb on - strand at 1931.242 kb on - strand at 1931.266 kb on - strand at 1931.266 kb on - strand at 1931.338 kb on - strand at 1931.396 kb on - strand at 1931.399 kb on + strand at 1931.400 kb on - strand at 1931.400 kb on - strand at 1931.402 kb on - strand at 1931.405 kb on + strand at 1931.406 kb on - strand at 1931.489 kb on + strand, within BNILDI_09580 at 1931.605 kb on - strand, within BNILDI_09580 at 1931.621 kb on - strand, within BNILDI_09580 at 1931.624 kb on - strand, within BNILDI_09580 at 1931.624 kb on - strand, within BNILDI_09580 at 1931.625 kb on + strand, within BNILDI_09580 at 1931.625 kb on + strand, within BNILDI_09580 at 1931.651 kb on - strand, within BNILDI_09580 at 1931.671 kb on - strand, within BNILDI_09580 at 1931.671 kb on - strand, within BNILDI_09580 at 1931.750 kb on + strand, within BNILDI_09580 at 1931.831 kb on - strand, within BNILDI_09580 at 1931.831 kb on - strand, within BNILDI_09580 at 1931.831 kb on - strand, within BNILDI_09580 at 1931.879 kb on + strand at 1931.879 kb on + strand at 1931.880 kb on - strand at 1931.908 kb on + strand at 1931.969 kb on - strand at 1932.087 kb on + strand, within BNILDI_09585 at 1932.173 kb on - strand, within BNILDI_09585 at 1932.255 kb on - strand, within BNILDI_09585 at 1932.287 kb on + strand, within BNILDI_09585 at 1932.510 kb on + strand, within BNILDI_09585 at 1932.511 kb on - strand, within BNILDI_09585 at 1932.551 kb on + strand, within BNILDI_09585 at 1932.767 kb on + strand, within BNILDI_09585 at 1932.775 kb on + strand, within BNILDI_09585 at 1932.822 kb on + strand, within BNILDI_09585 at 1932.823 kb on - strand, within BNILDI_09585 at 1932.884 kb on + strand, within BNILDI_09585 at 1932.924 kb on + strand, within BNILDI_09585 at 1932.970 kb on + strand, within BNILDI_09585 at 1933.021 kb on + strand, within BNILDI_09585 at 1933.102 kb on + strand at 1933.102 kb on + strand at 1933.108 kb on - strand at 1933.233 kb on + strand at 1933.276 kb on + strand at 1933.276 kb on + strand at 1933.276 kb on + strand at 1933.277 kb on - strand at 1933.277 kb on - strand at 1933.277 kb on - strand at 1933.435 kb on + strand at 1933.435 kb on + strand at 1933.436 kb on - strand at 1933.436 kb on - strand at 1933.446 kb on + strand at 1933.495 kb on - strand at 1933.810 kb on - strand, within BNILDI_09590
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 1,930,961 - -0.6 1,931,003 + -0.6 1,931,016 + +0.7 1,931,016 + +3.3 1,931,016 + +1.0 1,931,089 - -0.2 1,931,183 - +0.4 1,931,183 - -0.2 1,931,242 - +0.7 1,931,266 - +0.8 1,931,266 - +1.9 1,931,338 - +0.6 1,931,396 - -0.2 1,931,399 + +0.3 1,931,400 - +0.8 1,931,400 - -0.3 1,931,402 - -0.3 1,931,405 + -2.0 1,931,406 - -1.8 1,931,489 + BNILDI_09580 0.21 +0.9 1,931,605 - BNILDI_09580 0.42 -0.6 1,931,621 - BNILDI_09580 0.45 +0.7 1,931,624 - BNILDI_09580 0.46 +0.8 1,931,624 - BNILDI_09580 0.46 -1.1 1,931,625 + BNILDI_09580 0.46 +1.1 1,931,625 + BNILDI_09580 0.46 -0.2 1,931,651 - BNILDI_09580 0.51 +2.4 1,931,671 - BNILDI_09580 0.55 -0.4 1,931,671 - BNILDI_09580 0.55 -0.3 1,931,750 + BNILDI_09580 0.69 -0.8 1,931,831 - BNILDI_09580 0.84 +0.5 1,931,831 - BNILDI_09580 0.84 -1.1 1,931,831 - BNILDI_09580 0.84 -0.8 1,931,879 + -0.2 1,931,879 + -0.1 1,931,880 - -1.4 1,931,908 + -0.6 1,931,969 - +0.7 1,932,087 + BNILDI_09585 0.10 -1.5 1,932,173 - BNILDI_09585 0.17 +0.7 1,932,255 - BNILDI_09585 0.24 +1.5 1,932,287 + BNILDI_09585 0.27 +0.1 1,932,510 + BNILDI_09585 0.45 -0.4 1,932,511 - BNILDI_09585 0.45 +0.2 1,932,551 + BNILDI_09585 0.48 -0.2 1,932,767 + BNILDI_09585 0.66 -1.3 1,932,775 + BNILDI_09585 0.67 +0.4 1,932,822 + BNILDI_09585 0.71 -0.8 1,932,823 - BNILDI_09585 0.71 +0.4 1,932,884 + BNILDI_09585 0.76 -0.2 1,932,924 + BNILDI_09585 0.79 -0.2 1,932,970 + BNILDI_09585 0.83 +1.1 1,933,021 + BNILDI_09585 0.87 -0.2 1,933,102 + -0.4 1,933,102 + +0.4 1,933,108 - +0.1 1,933,233 + -2.2 1,933,276 + -0.4 1,933,276 + -1.1 1,933,276 + -0.1 1,933,277 - +0.3 1,933,277 - -1.3 1,933,277 - -1.4 1,933,435 + +0.7 1,933,435 + -0.4 1,933,436 - -1.7 1,933,436 - -0.8 1,933,446 + +0.8 1,933,495 - +0.3 1,933,810 - BNILDI_09590 0.85 -0.1
Or see this region's nucleotide sequence