Strain Fitness in Escherichia coli ECRC62 around BNILDI_09585

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_09580 and BNILDI_09585 are separated by 44 nucleotidesBNILDI_09585 and BNILDI_09590 are separated by 304 nucleotidesBNILDI_09590 and tnp-IS1 are separated by 44 nucleotides BNILDI_09580: BNILDI_09580 - hypothetical protein, at 1,931,378 to 1,931,914 _09580 BNILDI_09585: BNILDI_09585 - hypothetical protein, at 1,931,959 to 1,933,182 _09585 BNILDI_09590: BNILDI_09590 - IS1 family transposase, at 1,933,487 to 1,933,864 _09590 BNILDI_09595: tnp-IS1 - IS1 family transposase, at 1,933,909 to 1,934,184 tnp-IS1 Position (kb) 1931 1932 1933 1934Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1930.961 kb on - strandat 1931.003 kb on + strandat 1931.016 kb on + strandat 1931.016 kb on + strandat 1931.016 kb on + strandat 1931.089 kb on - strandat 1931.183 kb on - strandat 1931.183 kb on - strandat 1931.242 kb on - strandat 1931.266 kb on - strandat 1931.266 kb on - strandat 1931.338 kb on - strandat 1931.396 kb on - strandat 1931.399 kb on + strandat 1931.400 kb on - strandat 1931.400 kb on - strandat 1931.402 kb on - strandat 1931.405 kb on + strandat 1931.406 kb on - strandat 1931.489 kb on + strand, within BNILDI_09580at 1931.605 kb on - strand, within BNILDI_09580at 1931.621 kb on - strand, within BNILDI_09580at 1931.624 kb on - strand, within BNILDI_09580at 1931.624 kb on - strand, within BNILDI_09580at 1931.625 kb on + strand, within BNILDI_09580at 1931.625 kb on + strand, within BNILDI_09580at 1931.651 kb on - strand, within BNILDI_09580at 1931.671 kb on - strand, within BNILDI_09580at 1931.671 kb on - strand, within BNILDI_09580at 1931.750 kb on + strand, within BNILDI_09580at 1931.831 kb on - strand, within BNILDI_09580at 1931.831 kb on - strand, within BNILDI_09580at 1931.831 kb on - strand, within BNILDI_09580at 1931.879 kb on + strandat 1931.879 kb on + strandat 1931.880 kb on - strandat 1931.908 kb on + strandat 1931.969 kb on - strandat 1932.087 kb on + strand, within BNILDI_09585at 1932.173 kb on - strand, within BNILDI_09585at 1932.255 kb on - strand, within BNILDI_09585at 1932.287 kb on + strand, within BNILDI_09585at 1932.510 kb on + strand, within BNILDI_09585at 1932.511 kb on - strand, within BNILDI_09585at 1932.551 kb on + strand, within BNILDI_09585at 1932.767 kb on + strand, within BNILDI_09585at 1932.775 kb on + strand, within BNILDI_09585at 1932.822 kb on + strand, within BNILDI_09585at 1932.823 kb on - strand, within BNILDI_09585at 1932.884 kb on + strand, within BNILDI_09585at 1932.924 kb on + strand, within BNILDI_09585at 1932.970 kb on + strand, within BNILDI_09585at 1933.021 kb on + strand, within BNILDI_09585at 1933.102 kb on + strandat 1933.102 kb on + strandat 1933.108 kb on - strandat 1933.233 kb on + strandat 1933.276 kb on + strandat 1933.276 kb on + strandat 1933.276 kb on + strandat 1933.277 kb on - strandat 1933.277 kb on - strandat 1933.277 kb on - strandat 1933.435 kb on + strandat 1933.435 kb on + strandat 1933.436 kb on - strandat 1933.436 kb on - strandat 1933.446 kb on + strandat 1933.495 kb on - strandat 1933.810 kb on - strand, within BNILDI_09590

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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1,930,961 - -0.6
1,931,003 + -0.6
1,931,016 + +0.7
1,931,016 + +3.3
1,931,016 + +1.0
1,931,089 - -0.2
1,931,183 - +0.4
1,931,183 - -0.2
1,931,242 - +0.7
1,931,266 - +0.8
1,931,266 - +1.9
1,931,338 - +0.6
1,931,396 - -0.2
1,931,399 + +0.3
1,931,400 - +0.8
1,931,400 - -0.3
1,931,402 - -0.3
1,931,405 + -2.0
1,931,406 - -1.8
1,931,489 + BNILDI_09580 0.21 +0.9
1,931,605 - BNILDI_09580 0.42 -0.6
1,931,621 - BNILDI_09580 0.45 +0.7
1,931,624 - BNILDI_09580 0.46 +0.8
1,931,624 - BNILDI_09580 0.46 -1.1
1,931,625 + BNILDI_09580 0.46 +1.1
1,931,625 + BNILDI_09580 0.46 -0.2
1,931,651 - BNILDI_09580 0.51 +2.4
1,931,671 - BNILDI_09580 0.55 -0.4
1,931,671 - BNILDI_09580 0.55 -0.3
1,931,750 + BNILDI_09580 0.69 -0.8
1,931,831 - BNILDI_09580 0.84 +0.5
1,931,831 - BNILDI_09580 0.84 -1.1
1,931,831 - BNILDI_09580 0.84 -0.8
1,931,879 + -0.2
1,931,879 + -0.1
1,931,880 - -1.4
1,931,908 + -0.6
1,931,969 - +0.7
1,932,087 + BNILDI_09585 0.10 -1.5
1,932,173 - BNILDI_09585 0.17 +0.7
1,932,255 - BNILDI_09585 0.24 +1.5
1,932,287 + BNILDI_09585 0.27 +0.1
1,932,510 + BNILDI_09585 0.45 -0.4
1,932,511 - BNILDI_09585 0.45 +0.2
1,932,551 + BNILDI_09585 0.48 -0.2
1,932,767 + BNILDI_09585 0.66 -1.3
1,932,775 + BNILDI_09585 0.67 +0.4
1,932,822 + BNILDI_09585 0.71 -0.8
1,932,823 - BNILDI_09585 0.71 +0.4
1,932,884 + BNILDI_09585 0.76 -0.2
1,932,924 + BNILDI_09585 0.79 -0.2
1,932,970 + BNILDI_09585 0.83 +1.1
1,933,021 + BNILDI_09585 0.87 -0.2
1,933,102 + -0.4
1,933,102 + +0.4
1,933,108 - +0.1
1,933,233 + -2.2
1,933,276 + -0.4
1,933,276 + -1.1
1,933,276 + -0.1
1,933,277 - +0.3
1,933,277 - -1.3
1,933,277 - -1.4
1,933,435 + +0.7
1,933,435 + -0.4
1,933,436 - -1.7
1,933,436 - -0.8
1,933,446 + +0.8
1,933,495 - +0.3
1,933,810 - BNILDI_09590 0.85 -0.1

Or see this region's nucleotide sequence