Strain Fitness in Escherichia coli ECRC62 around BNILDI_07715

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuxuB and uxuR are separated by 262 nucleotidesuxuR and yjiC are separated by 140 nucleotides BNILDI_07710: uxuB - D-mannonate oxidoreductase, at 1,541,733 to 1,543,193 uxuB BNILDI_07715: uxuR - Uxu operon transcriptional regulator, at 1,543,456 to 1,544,181 uxuR BNILDI_07720: yjiC - Uncharacterized protein YjiC, at 1,544,322 to 1,545,152 yjiC Position (kb) 1543 1544 1545Strain fitness (log2 ratio) -1 0 1at 1542.472 kb on - strand, within uxuBat 1542.672 kb on - strand, within uxuBat 1542.830 kb on + strand, within uxuBat 1542.830 kb on + strand, within uxuBat 1542.958 kb on - strand, within uxuBat 1543.300 kb on + strandat 1543.487 kb on - strandat 1543.621 kb on + strand, within uxuRat 1543.771 kb on - strand, within uxuRat 1544.336 kb on - strandat 1544.657 kb on - strand, within yjiCat 1545.056 kb on - strand, within yjiCat 1545.156 kb on - strandat 1545.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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1,542,472 - uxuB BNILDI_07710 0.51 +0.7
1,542,672 - uxuB BNILDI_07710 0.64 -0.5
1,542,830 + uxuB BNILDI_07710 0.75 -0.2
1,542,830 + uxuB BNILDI_07710 0.75 +0.5
1,542,958 - uxuB BNILDI_07710 0.84 -0.2
1,543,300 + -0.2
1,543,487 - -1.7
1,543,621 + uxuR BNILDI_07715 0.23 -0.5
1,543,771 - uxuR BNILDI_07715 0.43 -0.8
1,544,336 - +0.4
1,544,657 - yjiC BNILDI_07720 0.40 +1.5
1,545,056 - yjiC BNILDI_07720 0.88 +0.3
1,545,156 - +0.3
1,545,156 - +1.2

Or see this region's nucleotide sequence