Strain Fitness in Escherichia coli ECRC62 around BNILDI_07570

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_07560 and BNILDI_07565 are separated by 135 nucleotidesBNILDI_07565 and insB are separated by 128 nucleotidesinsB and BNILDI_07575 are separated by 527 nucleotidesBNILDI_07575 and BNILDI_07580 are separated by 123 nucleotides BNILDI_07560: BNILDI_07560 - PfkB family carbohydrate kinase, at 1,507,328 to 1,508,080 _07560 BNILDI_07565: BNILDI_07565 - HTH-Tnp-IS1 domain-containing protein, at 1,508,216 to 1,508,275 _07565 BNILDI_07570: insB - Transposase and inactivated derivatives, IS1 family, at 1,508,404 to 1,508,697 insB BNILDI_07575: BNILDI_07575 - hypothetical protein, at 1,509,225 to 1,509,335 _07575 BNILDI_07580: BNILDI_07580 - biofilm development YmgB/AriR family protein, at 1,509,459 to 1,509,716 _07580 Position (kb) 1508 1509Strain fitness (log2 ratio) -2 -1 0 1 2at 1507.653 kb on + strand, within BNILDI_07560at 1507.925 kb on + strand, within BNILDI_07560at 1507.926 kb on - strand, within BNILDI_07560at 1507.931 kb on + strand, within BNILDI_07560at 1507.933 kb on + strand, within BNILDI_07560at 1507.934 kb on - strand, within BNILDI_07560at 1508.621 kb on + strand, within insBat 1508.681 kb on + strandat 1508.759 kb on + strandat 1508.759 kb on + strandat 1508.760 kb on - strandat 1508.762 kb on - strandat 1508.762 kb on - strandat 1508.763 kb on + strandat 1508.764 kb on - strandat 1508.764 kb on - strandat 1508.773 kb on + strandat 1508.962 kb on - strandat 1508.987 kb on - strandat 1508.987 kb on - strandat 1509.026 kb on + strandat 1509.026 kb on + strandat 1509.027 kb on - strandat 1509.031 kb on - strandat 1509.064 kb on - strandat 1509.155 kb on + strandat 1509.288 kb on - strand, within BNILDI_07575at 1509.596 kb on - strand, within BNILDI_07580

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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1,507,653 + BNILDI_07560 0.43 +0.1
1,507,925 + BNILDI_07560 0.79 -2.1
1,507,926 - BNILDI_07560 0.79 -0.2
1,507,931 + BNILDI_07560 0.80 +1.8
1,507,933 + BNILDI_07560 0.80 -0.7
1,507,934 - BNILDI_07560 0.80 +1.5
1,508,621 + insB BNILDI_07570 0.74 -1.2
1,508,681 + -1.4
1,508,759 + -1.0
1,508,759 + -0.5
1,508,760 - +0.6
1,508,762 - +0.2
1,508,762 - +0.2
1,508,763 + +0.3
1,508,764 - +0.2
1,508,764 - +0.3
1,508,773 + +0.3
1,508,962 - +0.5
1,508,987 - -0.5
1,508,987 - +0.5
1,509,026 + -0.1
1,509,026 + +0.9
1,509,027 - +0.4
1,509,031 - +0.0
1,509,064 - -0.9
1,509,155 + -0.1
1,509,288 - BNILDI_07575 0.57 +0.3
1,509,596 - BNILDI_07580 0.53 -1.3

Or see this region's nucleotide sequence