Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_07560 and BNILDI_07565 are separated by 135 nucleotides BNILDI_07565 and insB are separated by 128 nucleotides insB and BNILDI_07575 are separated by 527 nucleotides BNILDI_07575 and BNILDI_07580 are separated by 123 nucleotides
BNILDI_07560: BNILDI_07560 - PfkB family carbohydrate kinase, at 1,507,328 to 1,508,080
_07560
BNILDI_07565: BNILDI_07565 - HTH-Tnp-IS1 domain-containing protein, at 1,508,216 to 1,508,275
_07565
BNILDI_07570: insB - Transposase and inactivated derivatives, IS1 family, at 1,508,404 to 1,508,697
insB
BNILDI_07575: BNILDI_07575 - hypothetical protein, at 1,509,225 to 1,509,335
_07575
BNILDI_07580: BNILDI_07580 - biofilm development YmgB/AriR family protein, at 1,509,459 to 1,509,716
_07580
Position (kb)
1508
1509 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1507.653 kb on + strand, within BNILDI_07560 at 1507.925 kb on + strand, within BNILDI_07560 at 1507.926 kb on - strand, within BNILDI_07560 at 1507.931 kb on + strand, within BNILDI_07560 at 1507.933 kb on + strand, within BNILDI_07560 at 1507.934 kb on - strand, within BNILDI_07560 at 1508.621 kb on + strand, within insB at 1508.681 kb on + strand at 1508.759 kb on + strand at 1508.759 kb on + strand at 1508.760 kb on - strand at 1508.762 kb on - strand at 1508.762 kb on - strand at 1508.763 kb on + strand at 1508.764 kb on - strand at 1508.764 kb on - strand at 1508.773 kb on + strand at 1508.962 kb on - strand at 1508.987 kb on - strand at 1508.987 kb on - strand at 1509.026 kb on + strand at 1509.026 kb on + strand at 1509.027 kb on - strand at 1509.031 kb on - strand at 1509.064 kb on - strand at 1509.155 kb on + strand at 1509.288 kb on - strand, within BNILDI_07575 at 1509.596 kb on - strand, within BNILDI_07580
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 1,507,653 + BNILDI_07560 0.43 +0.1 1,507,925 + BNILDI_07560 0.79 -2.1 1,507,926 - BNILDI_07560 0.79 -0.2 1,507,931 + BNILDI_07560 0.80 +1.8 1,507,933 + BNILDI_07560 0.80 -0.7 1,507,934 - BNILDI_07560 0.80 +1.5 1,508,621 + insB BNILDI_07570 0.74 -1.2 1,508,681 + -1.4 1,508,759 + -1.0 1,508,759 + -0.5 1,508,760 - +0.6 1,508,762 - +0.2 1,508,762 - +0.2 1,508,763 + +0.3 1,508,764 - +0.2 1,508,764 - +0.3 1,508,773 + +0.3 1,508,962 - +0.5 1,508,987 - -0.5 1,508,987 - +0.5 1,509,026 + -0.1 1,509,026 + +0.9 1,509,027 - +0.4 1,509,031 - +0.0 1,509,064 - -0.9 1,509,155 + -0.1 1,509,288 - BNILDI_07575 0.57 +0.3 1,509,596 - BNILDI_07580 0.53 -1.3
Or see this region's nucleotide sequence