Strain Fitness in Escherichia coli ECRC62 around BNILDI_07330

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpmbA and cybC are separated by 182 nucleotidescybC and nrdG are separated by 44 nucleotidesnrdG and nrdD are separated by 157 nucleotides BNILDI_07325: pmbA - metalloprotease PmbA, at 1,459,915 to 1,461,267 pmbA BNILDI_07330: cybC - cytochrome b562, at 1,461,450 to 1,461,836 cybC BNILDI_07335: nrdG - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 1,461,881 to 1,462,345 nrdG BNILDI_07340: nrdD - anaerobic ribonucleoside-triphosphate reductase, at 1,462,503 to 1,464,641 nrdD Position (kb) 1461 1462Strain fitness (log2 ratio) -1 0 1 2at 1460.493 kb on - strand, within pmbAat 1460.493 kb on - strand, within pmbAat 1460.865 kb on + strand, within pmbAat 1460.865 kb on + strand, within pmbAat 1460.869 kb on - strand, within pmbAat 1460.869 kb on - strand, within pmbAat 1460.872 kb on - strand, within pmbAat 1460.909 kb on - strand, within pmbAat 1461.158 kb on + strandat 1461.159 kb on - strandat 1461.165 kb on + strandat 1461.165 kb on + strandat 1461.166 kb on - strandat 1461.178 kb on - strandat 1461.213 kb on + strandat 1461.213 kb on + strandat 1461.216 kb on + strandat 1461.217 kb on - strandat 1461.218 kb on + strandat 1461.218 kb on + strandat 1461.219 kb on - strandat 1461.219 kb on - strandat 1461.219 kb on - strandat 1461.371 kb on + strandat 1461.429 kb on - strandat 1461.456 kb on - strandat 1461.456 kb on - strandat 1461.467 kb on - strandat 1461.470 kb on + strandat 1461.665 kb on + strand, within cybCat 1461.666 kb on - strand, within cybCat 1461.828 kb on + strandat 1461.879 kb on + strandat 1461.880 kb on - strandat 1461.880 kb on - strandat 1461.880 kb on - strandat 1461.880 kb on - strandat 1461.880 kb on - strandat 1461.880 kb on - strandat 1462.080 kb on - strand, within nrdGat 1462.326 kb on + strandat 1462.326 kb on + strandat 1462.326 kb on + strandat 1462.329 kb on + strandat 1462.329 kb on + strandat 1462.330 kb on - strandat 1462.330 kb on - strandat 1462.339 kb on - strandat 1462.347 kb on - strandat 1462.361 kb on - strandat 1462.509 kb on + strandat 1462.545 kb on - strandat 1462.593 kb on + strandat 1462.593 kb on + strandat 1462.593 kb on + strandat 1462.594 kb on - strandat 1462.594 kb on - strandat 1462.695 kb on - strandat 1462.708 kb on + strandat 1462.741 kb on + strand, within nrdDat 1462.742 kb on - strand, within nrdDat 1462.742 kb on - strand, within nrdDat 1462.747 kb on - strand, within nrdDat 1462.763 kb on - strand, within nrdD

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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1,460,493 - pmbA BNILDI_07325 0.43 +1.0
1,460,493 - pmbA BNILDI_07325 0.43 -0.7
1,460,865 + pmbA BNILDI_07325 0.70 +0.1
1,460,865 + pmbA BNILDI_07325 0.70 +0.8
1,460,869 - pmbA BNILDI_07325 0.71 -0.1
1,460,869 - pmbA BNILDI_07325 0.71 -1.2
1,460,872 - pmbA BNILDI_07325 0.71 +0.5
1,460,909 - pmbA BNILDI_07325 0.73 +2.0
1,461,158 + +1.2
1,461,159 - -1.3
1,461,165 + +1.5
1,461,165 + +0.5
1,461,166 - +0.0
1,461,178 - -0.1
1,461,213 + +0.4
1,461,213 + -0.6
1,461,216 + +2.0
1,461,217 - +0.4
1,461,218 + +0.1
1,461,218 + -0.4
1,461,219 - +1.7
1,461,219 - -0.4
1,461,219 - +1.4
1,461,371 + -1.4
1,461,429 - -0.6
1,461,456 - +0.4
1,461,456 - +0.1
1,461,467 - -0.4
1,461,470 + +0.3
1,461,665 + cybC BNILDI_07330 0.56 -0.1
1,461,666 - cybC BNILDI_07330 0.56 +0.8
1,461,828 + +0.1
1,461,879 + -0.3
1,461,880 - -0.2
1,461,880 - +1.3
1,461,880 - +0.4
1,461,880 - -1.1
1,461,880 - -0.9
1,461,880 - +0.6
1,462,080 - nrdG BNILDI_07335 0.43 -0.4
1,462,326 + +0.5
1,462,326 + -0.0
1,462,326 + +0.3
1,462,329 + -0.8
1,462,329 + -1.2
1,462,330 - +0.1
1,462,330 - +0.1
1,462,339 - -0.1
1,462,347 - +0.2
1,462,361 - +0.2
1,462,509 + +0.9
1,462,545 - -0.1
1,462,593 + +0.7
1,462,593 + +0.2
1,462,593 + -0.0
1,462,594 - -0.5
1,462,594 - +0.1
1,462,695 - +0.7
1,462,708 + +0.5
1,462,741 + nrdD BNILDI_07340 0.11 +1.6
1,462,742 - nrdD BNILDI_07340 0.11 -0.5
1,462,742 - nrdD BNILDI_07340 0.11 +0.9
1,462,747 - nrdD BNILDI_07340 0.11 +0.7
1,462,763 - nrdD BNILDI_07340 0.12 +0.6

Or see this region's nucleotide sequence