Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt plsB and dgkA are separated by 170 nucleotides dgkA and lexA are separated by 109 nucleotides lexA and dinF are separated by 72 nucleotides
BNILDI_06290: plsB - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 1,255,719 to 1,258,142
plsB
BNILDI_06295: dgkA - diacylglycerol kinase, at 1,258,313 to 1,258,681
dgkA
BNILDI_06300: lexA - transcriptional repressor LexA, at 1,258,791 to 1,259,399
lexA
BNILDI_06305: dinF - MATE family efflux transporter DinF, at 1,259,472 to 1,260,797
dinF
Position (kb)
1258
1259 Strain fitness (log2 ratio)
-1
0
1 at 1258.266 kb on + strand at 1258.273 kb on - strand at 1258.281 kb on - strand at 1258.292 kb on + strand at 1258.600 kb on + strand, within dgkA at 1258.712 kb on - strand at 1258.712 kb on - strand at 1258.750 kb on - strand at 1258.751 kb on + strand at 1258.753 kb on + strand at 1258.753 kb on + strand at 1258.774 kb on + strand at 1258.774 kb on + strand at 1258.774 kb on + strand at 1259.397 kb on + strand at 1259.402 kb on + strand at 1259.402 kb on + strand at 1259.403 kb on - strand at 1259.403 kb on - strand at 1259.602 kb on - strand at 1259.648 kb on + strand, within dinF at 1259.649 kb on - strand, within dinF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 1,258,266 + +0.3 1,258,273 - +0.1 1,258,281 - +1.2 1,258,292 + +0.2 1,258,600 + dgkA BNILDI_06295 0.78 -0.9 1,258,712 - +0.1 1,258,712 - -0.9 1,258,750 - +0.7 1,258,751 + +0.6 1,258,753 + +0.1 1,258,753 + +1.7 1,258,774 + +0.6 1,258,774 + -1.2 1,258,774 + +0.3 1,259,397 + -0.5 1,259,402 + -0.5 1,259,402 + +0.7 1,259,403 - -1.1 1,259,403 - -1.2 1,259,602 - +0.3 1,259,648 + dinF BNILDI_06305 0.13 +0.1 1,259,649 - dinF BNILDI_06305 0.13 +0.2
Or see this region's nucleotide sequence