Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt 23S_rrna and 5S_rrna are separated by 95 nucleotides 5S_rrna and yjaB are separated by 117 nucleotides yjaB and metA are separated by 156 nucleotides
BNILDI_06085: 23S_rrna - 23S ribosomal RNA, at 1,209,657 to 1,212,562
_rrna
BNILDI_06090: 5S_rrna - 5S ribosomal RNA, at 1,212,658 to 1,212,773
_rrna
BNILDI_06095: yjaB - acetyltransferase, at 1,212,891 to 1,213,334
yjaB
BNILDI_06100: metA - homoserine O-succinyltransferase, at 1,213,491 to 1,214,420
metA
Position (kb) 1212
1213
1214 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1212.904 kb on + strand at 1212.904 kb on + strand at 1212.904 kb on + strand at 1212.983 kb on + strand, within yjaB at 1212.984 kb on - strand, within yjaB at 1212.986 kb on - strand, within yjaB at 1213.119 kb on - strand, within yjaB at 1213.132 kb on - strand, within yjaB at 1213.140 kb on - strand, within yjaB at 1213.325 kb on + strand at 1213.364 kb on + strand at 1213.369 kb on + strand at 1213.598 kb on + strand, within metA at 1213.614 kb on - strand, within metA at 1213.755 kb on + strand, within metA at 1214.148 kb on + strand, within metA at 1214.148 kb on + strand, within metA at 1214.149 kb on - strand, within metA at 1214.229 kb on + strand, within metA at 1214.271 kb on + strand, within metA at 1214.271 kb on + strand, within metA at 1214.272 kb on - strand, within metA at 1214.272 kb on - strand, within metA at 1214.273 kb on + strand, within metA at 1214.273 kb on + strand, within metA at 1214.274 kb on - strand, within metA at 1214.277 kb on + strand, within metA at 1214.277 kb on + strand, within metA at 1214.278 kb on - strand, within metA at 1214.303 kb on + strand, within metA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 1,212,904 + -0.0 1,212,904 + -1.4 1,212,904 + +1.8 1,212,983 + yjaB BNILDI_06095 0.21 -0.6 1,212,984 - yjaB BNILDI_06095 0.21 -2.3 1,212,986 - yjaB BNILDI_06095 0.21 -1.5 1,213,119 - yjaB BNILDI_06095 0.51 -0.5 1,213,132 - yjaB BNILDI_06095 0.54 -0.2 1,213,140 - yjaB BNILDI_06095 0.56 -0.4 1,213,325 + -0.1 1,213,364 + -0.0 1,213,369 + +2.3 1,213,598 + metA BNILDI_06100 0.12 +1.6 1,213,614 - metA BNILDI_06100 0.13 +0.5 1,213,755 + metA BNILDI_06100 0.28 +0.1 1,214,148 + metA BNILDI_06100 0.71 +1.6 1,214,148 + metA BNILDI_06100 0.71 -0.4 1,214,149 - metA BNILDI_06100 0.71 -0.2 1,214,229 + metA BNILDI_06100 0.79 +1.1 1,214,271 + metA BNILDI_06100 0.84 -0.8 1,214,271 + metA BNILDI_06100 0.84 -0.0 1,214,272 - metA BNILDI_06100 0.84 +0.4 1,214,272 - metA BNILDI_06100 0.84 -1.6 1,214,273 + metA BNILDI_06100 0.84 -0.7 1,214,273 + metA BNILDI_06100 0.84 +0.5 1,214,274 - metA BNILDI_06100 0.84 -0.3 1,214,277 + metA BNILDI_06100 0.85 +0.2 1,214,277 + metA BNILDI_06100 0.85 +0.2 1,214,278 - metA BNILDI_06100 0.85 +0.2 1,214,303 + metA BNILDI_06100 0.87 -0.2
Or see this region's nucleotide sequence