Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapF and yigA overlap by 4 nucleotides yigA and xerC overlap by 4 nucleotides xerC and yigB overlap by 1 nucleotides yigB and uvrD are separated by 83 nucleotides
BNILDI_04975: dapF - diaminopimelate epimerase, at 985,125 to 985,949
dapF
BNILDI_04980: yigA - Uncharacterized protein YigA, at 985,946 to 986,653
yigA
BNILDI_04985: xerC - tyrosine recombinase XerC, at 986,650 to 987,546
xerC
BNILDI_04990: yigB - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 987,546 to 988,262
yigB
BNILDI_04995: uvrD - DNA helicase II, at 988,346 to 990,508
uvrD
Position (kb) 986
987
988 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 985.945 kb on + strand at 985.945 kb on + strand at 985.945 kb on + strand at 986.131 kb on + strand, within yigA at 986.138 kb on - strand, within yigA at 986.138 kb on - strand, within yigA at 986.211 kb on + strand, within yigA at 986.212 kb on - strand, within yigA at 986.216 kb on + strand, within yigA at 986.257 kb on + strand, within yigA at 986.257 kb on + strand, within yigA at 986.430 kb on - strand, within yigA at 986.469 kb on + strand, within yigA at 986.470 kb on - strand, within yigA at 986.546 kb on - strand, within yigA at 986.592 kb on + strand at 986.672 kb on + strand at 986.684 kb on + strand at 986.684 kb on + strand at 986.684 kb on + strand at 987.003 kb on + strand, within xerC at 987.396 kb on + strand, within xerC at 987.509 kb on - strand at 987.609 kb on + strand at 987.609 kb on + strand at 987.654 kb on - strand, within yigB at 987.670 kb on - strand, within yigB at 987.751 kb on - strand, within yigB at 987.910 kb on + strand, within yigB at 987.911 kb on - strand, within yigB at 987.990 kb on + strand, within yigB at 988.046 kb on + strand, within yigB at 988.047 kb on - strand, within yigB at 988.050 kb on + strand, within yigB at 988.050 kb on + strand, within yigB at 988.050 kb on + strand, within yigB at 988.050 kb on + strand, within yigB at 988.096 kb on + strand, within yigB at 988.096 kb on + strand, within yigB at 988.258 kb on + strand at 988.258 kb on + strand at 988.277 kb on + strand at 988.277 kb on + strand at 988.278 kb on - strand at 988.278 kb on - strand at 988.280 kb on - strand at 988.280 kb on - strand at 988.280 kb on - strand at 988.281 kb on + strand at 988.376 kb on - strand at 988.508 kb on + strand at 988.516 kb on + strand at 988.531 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 985,945 + -1.1 985,945 + -0.0 985,945 + +0.0 986,131 + yigA BNILDI_04980 0.26 +0.1 986,138 - yigA BNILDI_04980 0.27 -1.6 986,138 - yigA BNILDI_04980 0.27 +1.5 986,211 + yigA BNILDI_04980 0.37 +1.7 986,212 - yigA BNILDI_04980 0.38 -2.3 986,216 + yigA BNILDI_04980 0.38 +0.2 986,257 + yigA BNILDI_04980 0.44 -0.2 986,257 + yigA BNILDI_04980 0.44 +0.1 986,430 - yigA BNILDI_04980 0.68 +1.8 986,469 + yigA BNILDI_04980 0.74 +0.4 986,470 - yigA BNILDI_04980 0.74 +1.5 986,546 - yigA BNILDI_04980 0.85 -0.8 986,592 + -0.3 986,672 + +0.3 986,684 + -0.4 986,684 + -1.0 986,684 + -1.6 987,003 + xerC BNILDI_04985 0.39 -0.3 987,396 + xerC BNILDI_04985 0.83 -0.7 987,509 - +1.2 987,609 + +0.8 987,609 + -0.1 987,654 - yigB BNILDI_04990 0.15 -1.8 987,670 - yigB BNILDI_04990 0.17 -0.5 987,751 - yigB BNILDI_04990 0.29 -1.0 987,910 + yigB BNILDI_04990 0.51 +0.1 987,911 - yigB BNILDI_04990 0.51 -1.5 987,990 + yigB BNILDI_04990 0.62 -2.6 988,046 + yigB BNILDI_04990 0.70 +0.1 988,047 - yigB BNILDI_04990 0.70 -0.5 988,050 + yigB BNILDI_04990 0.70 -2.0 988,050 + yigB BNILDI_04990 0.70 +0.1 988,050 + yigB BNILDI_04990 0.70 -1.1 988,050 + yigB BNILDI_04990 0.70 -1.0 988,096 + yigB BNILDI_04990 0.77 -1.8 988,096 + yigB BNILDI_04990 0.77 +0.2 988,258 + -2.2 988,258 + -0.2 988,277 + +0.3 988,277 + -1.3 988,278 - +3.4 988,278 - -0.6 988,280 - -0.2 988,280 - +0.2 988,280 - -0.6 988,281 + -0.7 988,376 - -0.3 988,508 + +0.2 988,516 + +0.4 988,531 + +1.1
Or see this region's nucleotide sequence