Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rho and BNILDI_04805 are separated by 9 nucleotides BNILDI_04805 and wecA are separated by 11 nucleotides wecA and wzzE are separated by 11 nucleotides
BNILDI_04800: rho - transcription termination factor Rho, at 953,342 to 954,601
rho
BNILDI_04805: BNILDI_04805 - hypothetical protein, at 954,611 to 954,829
_04805
BNILDI_04810: wecA - UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, at 954,841 to 955,944
wecA
BNILDI_04815: wzzE - ECA polysaccharide chain length modulation protein, at 955,956 to 957,002
wzzE
Position (kb) 954
955
956 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 954.610 kb on + strand at 954.632 kb on + strand at 954.632 kb on + strand at 954.633 kb on - strand, within BNILDI_04805 at 954.633 kb on - strand, within BNILDI_04805 at 954.650 kb on + strand, within BNILDI_04805 at 954.664 kb on + strand, within BNILDI_04805 at 954.805 kb on + strand, within BNILDI_04805 at 954.805 kb on + strand, within BNILDI_04805 at 954.806 kb on - strand, within BNILDI_04805 at 954.806 kb on - strand, within BNILDI_04805 at 954.806 kb on - strand, within BNILDI_04805 at 954.806 kb on - strand, within BNILDI_04805 at 954.849 kb on - strand at 954.876 kb on + strand at 954.884 kb on + strand at 954.938 kb on + strand at 954.980 kb on + strand, within wecA at 954.980 kb on + strand, within wecA at 954.981 kb on - strand, within wecA at 955.007 kb on - strand, within wecA at 955.043 kb on - strand, within wecA at 955.045 kb on + strand, within wecA at 955.045 kb on + strand, within wecA at 955.045 kb on + strand, within wecA at 955.045 kb on + strand, within wecA at 955.046 kb on - strand, within wecA at 955.046 kb on - strand, within wecA at 955.046 kb on - strand, within wecA at 955.047 kb on + strand, within wecA at 955.048 kb on - strand, within wecA at 955.048 kb on - strand, within wecA at 955.048 kb on - strand, within wecA at 955.148 kb on + strand, within wecA at 955.170 kb on + strand, within wecA at 955.170 kb on + strand, within wecA at 955.170 kb on + strand, within wecA at 955.171 kb on - strand, within wecA at 955.171 kb on - strand, within wecA at 955.171 kb on - strand, within wecA at 955.193 kb on - strand, within wecA at 955.210 kb on + strand, within wecA at 955.210 kb on + strand, within wecA at 955.212 kb on + strand, within wecA at 955.212 kb on + strand, within wecA at 955.212 kb on + strand, within wecA at 955.212 kb on + strand, within wecA at 955.213 kb on - strand, within wecA at 955.213 kb on - strand, within wecA at 955.213 kb on - strand, within wecA at 955.213 kb on - strand, within wecA at 955.266 kb on - strand, within wecA at 955.435 kb on + strand, within wecA at 955.435 kb on + strand, within wecA at 955.436 kb on - strand, within wecA at 955.436 kb on - strand, within wecA at 955.436 kb on - strand, within wecA at 955.436 kb on - strand, within wecA at 955.436 kb on - strand, within wecA at 955.471 kb on + strand, within wecA at 955.500 kb on + strand, within wecA at 955.501 kb on - strand, within wecA at 955.522 kb on - strand, within wecA at 955.623 kb on + strand, within wecA at 955.623 kb on + strand, within wecA at 955.624 kb on - strand, within wecA at 955.628 kb on - strand, within wecA at 955.677 kb on + strand, within wecA at 955.677 kb on + strand, within wecA at 955.707 kb on + strand, within wecA at 955.734 kb on + strand, within wecA at 955.781 kb on - strand, within wecA at 955.855 kb on - strand at 955.881 kb on + strand at 955.942 kb on + strand at 955.942 kb on + strand at 956.047 kb on + strand at 956.095 kb on - strand, within wzzE at 956.135 kb on + strand, within wzzE at 956.172 kb on + strand, within wzzE at 956.256 kb on + strand, within wzzE at 956.257 kb on - strand, within wzzE at 956.325 kb on + strand, within wzzE at 956.325 kb on + strand, within wzzE at 956.326 kb on - strand, within wzzE at 956.326 kb on - strand, within wzzE at 956.326 kb on - strand, within wzzE at 956.326 kb on - strand, within wzzE at 956.326 kb on - strand, within wzzE at 956.384 kb on + strand, within wzzE at 956.414 kb on + strand, within wzzE at 956.471 kb on + strand, within wzzE at 956.487 kb on + strand, within wzzE at 956.487 kb on + strand, within wzzE at 956.488 kb on - strand, within wzzE at 956.614 kb on - strand, within wzzE at 956.614 kb on - strand, within wzzE at 956.670 kb on - strand, within wzzE at 956.800 kb on - strand, within wzzE at 956.822 kb on - strand, within wzzE at 956.936 kb on + strand at 956.936 kb on + strand at 956.936 kb on + strand at 956.937 kb on - strand at 956.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 954,610 + +1.1 954,632 + +0.5 954,632 + +0.3 954,633 - BNILDI_04805 0.10 -0.3 954,633 - BNILDI_04805 0.10 +0.4 954,650 + BNILDI_04805 0.18 -2.3 954,664 + BNILDI_04805 0.24 +1.9 954,805 + BNILDI_04805 0.89 +1.7 954,805 + BNILDI_04805 0.89 +1.2 954,806 - BNILDI_04805 0.89 -2.9 954,806 - BNILDI_04805 0.89 -3.6 954,806 - BNILDI_04805 0.89 -2.1 954,806 - BNILDI_04805 0.89 -2.5 954,849 - -3.0 954,876 + -0.3 954,884 + -2.4 954,938 + -2.9 954,980 + wecA BNILDI_04810 0.13 -1.8 954,980 + wecA BNILDI_04810 0.13 -4.0 954,981 - wecA BNILDI_04810 0.13 -3.9 955,007 - wecA BNILDI_04810 0.15 -2.9 955,043 - wecA BNILDI_04810 0.18 -2.9 955,045 + wecA BNILDI_04810 0.18 -3.9 955,045 + wecA BNILDI_04810 0.18 -1.9 955,045 + wecA BNILDI_04810 0.18 -2.6 955,045 + wecA BNILDI_04810 0.18 -1.7 955,046 - wecA BNILDI_04810 0.19 -3.3 955,046 - wecA BNILDI_04810 0.19 -1.6 955,046 - wecA BNILDI_04810 0.19 -2.0 955,047 + wecA BNILDI_04810 0.19 -1.9 955,048 - wecA BNILDI_04810 0.19 -2.5 955,048 - wecA BNILDI_04810 0.19 -3.4 955,048 - wecA BNILDI_04810 0.19 -2.8 955,148 + wecA BNILDI_04810 0.28 -2.4 955,170 + wecA BNILDI_04810 0.30 -2.8 955,170 + wecA BNILDI_04810 0.30 -3.0 955,170 + wecA BNILDI_04810 0.30 -1.6 955,171 - wecA BNILDI_04810 0.30 -0.8 955,171 - wecA BNILDI_04810 0.30 +0.3 955,171 - wecA BNILDI_04810 0.30 -3.0 955,193 - wecA BNILDI_04810 0.32 -2.3 955,210 + wecA BNILDI_04810 0.33 -2.0 955,210 + wecA BNILDI_04810 0.33 -1.1 955,212 + wecA BNILDI_04810 0.34 -2.6 955,212 + wecA BNILDI_04810 0.34 -1.6 955,212 + wecA BNILDI_04810 0.34 -2.6 955,212 + wecA BNILDI_04810 0.34 -3.3 955,213 - wecA BNILDI_04810 0.34 -3.5 955,213 - wecA BNILDI_04810 0.34 -3.3 955,213 - wecA BNILDI_04810 0.34 -4.0 955,213 - wecA BNILDI_04810 0.34 -4.3 955,266 - wecA BNILDI_04810 0.38 -3.4 955,435 + wecA BNILDI_04810 0.54 -2.5 955,435 + wecA BNILDI_04810 0.54 -3.3 955,436 - wecA BNILDI_04810 0.54 -3.5 955,436 - wecA BNILDI_04810 0.54 -3.8 955,436 - wecA BNILDI_04810 0.54 -3.0 955,436 - wecA BNILDI_04810 0.54 -3.0 955,436 - wecA BNILDI_04810 0.54 -0.4 955,471 + wecA BNILDI_04810 0.57 -3.0 955,500 + wecA BNILDI_04810 0.60 -2.3 955,501 - wecA BNILDI_04810 0.60 -0.5 955,522 - wecA BNILDI_04810 0.62 -2.6 955,623 + wecA BNILDI_04810 0.71 -3.3 955,623 + wecA BNILDI_04810 0.71 -2.6 955,624 - wecA BNILDI_04810 0.71 -2.6 955,628 - wecA BNILDI_04810 0.71 -3.1 955,677 + wecA BNILDI_04810 0.76 -2.5 955,677 + wecA BNILDI_04810 0.76 -1.0 955,707 + wecA BNILDI_04810 0.78 -4.9 955,734 + wecA BNILDI_04810 0.81 -1.6 955,781 - wecA BNILDI_04810 0.85 -2.8 955,855 - -0.3 955,881 + -0.7 955,942 + -0.1 955,942 + +0.4 956,047 + +0.6 956,095 - wzzE BNILDI_04815 0.13 -1.1 956,135 + wzzE BNILDI_04815 0.17 +1.7 956,172 + wzzE BNILDI_04815 0.21 +0.4 956,256 + wzzE BNILDI_04815 0.29 +0.2 956,257 - wzzE BNILDI_04815 0.29 -1.8 956,325 + wzzE BNILDI_04815 0.35 +0.5 956,325 + wzzE BNILDI_04815 0.35 +0.1 956,326 - wzzE BNILDI_04815 0.35 -1.8 956,326 - wzzE BNILDI_04815 0.35 +0.3 956,326 - wzzE BNILDI_04815 0.35 -1.8 956,326 - wzzE BNILDI_04815 0.35 +0.1 956,326 - wzzE BNILDI_04815 0.35 +0.1 956,384 + wzzE BNILDI_04815 0.41 -0.7 956,414 + wzzE BNILDI_04815 0.44 +0.8 956,471 + wzzE BNILDI_04815 0.49 -0.8 956,487 + wzzE BNILDI_04815 0.51 -0.1 956,487 + wzzE BNILDI_04815 0.51 -0.5 956,488 - wzzE BNILDI_04815 0.51 +0.4 956,614 - wzzE BNILDI_04815 0.63 +1.5 956,614 - wzzE BNILDI_04815 0.63 -1.3 956,670 - wzzE BNILDI_04815 0.68 -0.3 956,800 - wzzE BNILDI_04815 0.81 +0.0 956,822 - wzzE BNILDI_04815 0.83 -0.6 956,936 + -1.1 956,936 + -0.9 956,936 + +0.3 956,937 - -0.0 956,937 - -1.1
Or see this region's nucleotide sequence