Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atpE and atpB are separated by 46 nucleotides atpB and atpI are separated by 8 nucleotides atpI and rsmG are separated by 616 nucleotides
BNILDI_04585: atpE - F0F1 ATP synthase subunit C, at 907,928 to 908,167
atpE
BNILDI_04590: atpB - F0F1 ATP synthase subunit A, at 908,214 to 909,029
atpB
BNILDI_04595: atpI - F0F1 ATP synthase subunit I, at 909,038 to 909,418
atpI
BNILDI_04600: rsmG - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 910,035 to 910,682
rsmG
Position (kb) 909
910 Strain fitness (log2 ratio) -1
0
1
2
3 at 908.202 kb on - strand at 908.211 kb on - strand at 909.057 kb on - strand at 909.227 kb on - strand, within atpI at 909.227 kb on - strand, within atpI at 909.363 kb on - strand, within atpI at 909.465 kb on - strand at 909.569 kb on + strand at 909.569 kb on + strand at 909.635 kb on - strand at 909.639 kb on - strand at 909.679 kb on + strand at 909.680 kb on - strand at 909.704 kb on - strand at 909.707 kb on + strand at 909.707 kb on + strand at 909.739 kb on + strand at 909.889 kb on - strand at 909.918 kb on - strand at 909.964 kb on + strand at 909.964 kb on + strand at 909.965 kb on - strand at 909.965 kb on - strand at 909.965 kb on - strand at 909.965 kb on - strand at 909.966 kb on + strand at 909.966 kb on + strand at 910.252 kb on - strand, within rsmG at 910.252 kb on - strand, within rsmG at 910.252 kb on - strand, within rsmG at 910.287 kb on + strand, within rsmG at 910.311 kb on - strand, within rsmG at 910.323 kb on - strand, within rsmG at 910.406 kb on + strand, within rsmG
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 908,202 - +1.5 908,211 - -0.5 909,057 - -1.1 909,227 - atpI BNILDI_04595 0.50 +0.4 909,227 - atpI BNILDI_04595 0.50 -0.4 909,363 - atpI BNILDI_04595 0.85 -0.0 909,465 - -0.6 909,569 + +0.4 909,569 + -0.3 909,635 - +0.7 909,639 - -0.7 909,679 + -0.4 909,680 - -0.9 909,704 - -0.5 909,707 + +0.9 909,707 + -0.2 909,739 + +3.5 909,889 - +1.4 909,918 - +0.4 909,964 + +0.2 909,964 + -0.3 909,965 - -0.0 909,965 - +0.2 909,965 - +0.5 909,965 - +0.0 909,966 + -0.7 909,966 + -0.2 910,252 - rsmG BNILDI_04600 0.33 -0.6 910,252 - rsmG BNILDI_04600 0.33 -0.9 910,252 - rsmG BNILDI_04600 0.33 -0.5 910,287 + rsmG BNILDI_04600 0.39 -0.1 910,311 - rsmG BNILDI_04600 0.43 -0.1 910,323 - rsmG BNILDI_04600 0.44 +1.2 910,406 + rsmG BNILDI_04600 0.57 -1.4
Or see this region's nucleotide sequence