Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yieH and cbrB are separated by 66 nucleotides cbrB and yieK are separated by 76 nucleotides yieK and BNILDI_04465 are separated by 226 nucleotides
BNILDI_04450: yieH - 6-phosphogluconate phosphatase, at 879,254 to 879,919
yieH
BNILDI_04455: cbrB - Inner membrane protein CbrB, at 879,986 to 880,459
cbrB
BNILDI_04460: yieK - glucosamine-6-phosphate deaminase, at 880,536 to 881,252
yieK
BNILDI_04465: BNILDI_04465 - alpha/beta hydrolase-fold protein, at 881,479 to 882,432
_04465
Position (kb) 880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 879.573 kb on + strand, within yieH at 879.577 kb on + strand, within yieH at 879.578 kb on - strand, within yieH at 879.607 kb on + strand, within yieH at 879.608 kb on - strand, within yieH at 879.622 kb on + strand, within yieH at 879.623 kb on - strand, within yieH at 879.632 kb on + strand, within yieH at 879.633 kb on - strand, within yieH at 879.633 kb on - strand, within yieH at 879.723 kb on + strand, within yieH at 879.723 kb on + strand, within yieH at 879.723 kb on + strand, within yieH at 879.723 kb on + strand, within yieH at 879.723 kb on + strand, within yieH at 879.724 kb on - strand, within yieH at 879.730 kb on - strand, within yieH at 879.790 kb on + strand, within yieH at 879.804 kb on - strand, within yieH at 879.804 kb on - strand, within yieH at 879.804 kb on - strand, within yieH at 879.907 kb on + strand at 879.910 kb on + strand at 879.917 kb on + strand at 879.967 kb on + strand at 879.971 kb on + strand at 879.972 kb on - strand at 879.985 kb on + strand at 879.986 kb on - strand at 880.044 kb on + strand, within cbrB at 880.070 kb on + strand, within cbrB at 880.070 kb on + strand, within cbrB at 880.071 kb on - strand, within cbrB at 880.074 kb on + strand, within cbrB at 880.110 kb on + strand, within cbrB at 880.111 kb on - strand, within cbrB at 880.120 kb on - strand, within cbrB at 880.138 kb on - strand, within cbrB at 880.248 kb on + strand, within cbrB at 880.294 kb on + strand, within cbrB at 880.294 kb on + strand, within cbrB at 880.295 kb on - strand, within cbrB at 880.475 kb on + strand at 880.481 kb on + strand at 880.481 kb on + strand at 880.512 kb on - strand at 880.537 kb on + strand at 880.538 kb on - strand at 880.538 kb on - strand at 880.538 kb on - strand at 880.563 kb on - strand at 880.680 kb on + strand, within yieK at 880.681 kb on - strand, within yieK at 880.729 kb on + strand, within yieK at 880.729 kb on + strand, within yieK at 880.730 kb on - strand, within yieK at 880.730 kb on - strand, within yieK at 880.781 kb on + strand, within yieK at 880.781 kb on + strand, within yieK at 880.838 kb on + strand, within yieK at 880.940 kb on + strand, within yieK at 880.941 kb on - strand, within yieK at 880.946 kb on + strand, within yieK at 880.961 kb on + strand, within yieK at 880.962 kb on - strand, within yieK at 881.001 kb on - strand, within yieK at 881.065 kb on + strand, within yieK at 881.066 kb on - strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.072 kb on - strand, within yieK at 881.093 kb on + strand, within yieK at 881.093 kb on + strand, within yieK at 881.117 kb on - strand, within yieK at 881.122 kb on + strand, within yieK at 881.122 kb on + strand, within yieK at 881.122 kb on + strand, within yieK at 881.122 kb on + strand, within yieK at 881.123 kb on - strand, within yieK at 881.123 kb on - strand, within yieK at 881.183 kb on + strand at 881.184 kb on - strand at 881.186 kb on - strand at 881.269 kb on - strand at 881.298 kb on + strand at 881.298 kb on + strand at 881.450 kb on + strand at 881.464 kb on + strand at 881.464 kb on + strand at 881.465 kb on - strand at 881.522 kb on - strand at 881.641 kb on - strand, within BNILDI_04465 at 881.721 kb on + strand, within BNILDI_04465 at 881.722 kb on - strand, within BNILDI_04465 at 881.895 kb on - strand, within BNILDI_04465 at 881.900 kb on + strand, within BNILDI_04465 at 881.933 kb on + strand, within BNILDI_04465 at 881.954 kb on + strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.991 kb on - strand, within BNILDI_04465 at 881.996 kb on - strand, within BNILDI_04465 at 882.039 kb on - strand, within BNILDI_04465 at 882.106 kb on - strand, within BNILDI_04465 at 882.118 kb on + strand, within BNILDI_04465 at 882.118 kb on + strand, within BNILDI_04465 at 882.165 kb on + strand, within BNILDI_04465 at 882.216 kb on + strand, within BNILDI_04465
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 879,573 + yieH BNILDI_04450 0.48 -0.7 879,577 + yieH BNILDI_04450 0.48 +0.9 879,578 - yieH BNILDI_04450 0.49 +1.5 879,607 + yieH BNILDI_04450 0.53 +0.6 879,608 - yieH BNILDI_04450 0.53 -0.3 879,622 + yieH BNILDI_04450 0.55 +0.3 879,623 - yieH BNILDI_04450 0.55 +1.2 879,632 + yieH BNILDI_04450 0.57 +0.7 879,633 - yieH BNILDI_04450 0.57 -0.1 879,633 - yieH BNILDI_04450 0.57 +0.4 879,723 + yieH BNILDI_04450 0.70 -0.5 879,723 + yieH BNILDI_04450 0.70 -0.3 879,723 + yieH BNILDI_04450 0.70 -1.1 879,723 + yieH BNILDI_04450 0.70 -0.1 879,723 + yieH BNILDI_04450 0.70 +0.2 879,724 - yieH BNILDI_04450 0.71 +0.0 879,730 - yieH BNILDI_04450 0.71 -1.5 879,790 + yieH BNILDI_04450 0.80 +0.2 879,804 - yieH BNILDI_04450 0.83 +1.5 879,804 - yieH BNILDI_04450 0.83 -0.3 879,804 - yieH BNILDI_04450 0.83 +0.1 879,907 + +0.5 879,910 + -1.0 879,917 + +1.2 879,967 + -0.0 879,971 + -1.5 879,972 - -3.2 879,985 + +2.1 879,986 - +0.0 880,044 + cbrB BNILDI_04455 0.12 +0.9 880,070 + cbrB BNILDI_04455 0.18 +1.1 880,070 + cbrB BNILDI_04455 0.18 -0.2 880,071 - cbrB BNILDI_04455 0.18 -1.0 880,074 + cbrB BNILDI_04455 0.19 +0.4 880,110 + cbrB BNILDI_04455 0.26 -0.5 880,111 - cbrB BNILDI_04455 0.26 +0.5 880,120 - cbrB BNILDI_04455 0.28 +0.4 880,138 - cbrB BNILDI_04455 0.32 +0.4 880,248 + cbrB BNILDI_04455 0.55 +0.9 880,294 + cbrB BNILDI_04455 0.65 -2.8 880,294 + cbrB BNILDI_04455 0.65 -0.1 880,295 - cbrB BNILDI_04455 0.65 -0.4 880,475 + +0.5 880,481 + -0.2 880,481 + +0.3 880,512 - -0.9 880,537 + -0.7 880,538 - +1.8 880,538 - -0.4 880,538 - +0.3 880,563 - -0.0 880,680 + yieK BNILDI_04460 0.20 +1.3 880,681 - yieK BNILDI_04460 0.20 -0.3 880,729 + yieK BNILDI_04460 0.27 +0.5 880,729 + yieK BNILDI_04460 0.27 +1.5 880,730 - yieK BNILDI_04460 0.27 -1.0 880,730 - yieK BNILDI_04460 0.27 -1.2 880,781 + yieK BNILDI_04460 0.34 +0.3 880,781 + yieK BNILDI_04460 0.34 +1.4 880,838 + yieK BNILDI_04460 0.42 -0.7 880,940 + yieK BNILDI_04460 0.56 +2.5 880,941 - yieK BNILDI_04460 0.56 -0.0 880,946 + yieK BNILDI_04460 0.57 +0.1 880,961 + yieK BNILDI_04460 0.59 -0.7 880,962 - yieK BNILDI_04460 0.59 -0.6 881,001 - yieK BNILDI_04460 0.65 +1.7 881,065 + yieK BNILDI_04460 0.74 -0.2 881,066 - yieK BNILDI_04460 0.74 -0.8 881,071 + yieK BNILDI_04460 0.75 -1.8 881,071 + yieK BNILDI_04460 0.75 -0.8 881,071 + yieK BNILDI_04460 0.75 +0.0 881,071 + yieK BNILDI_04460 0.75 +1.1 881,071 + yieK BNILDI_04460 0.75 -0.2 881,071 + yieK BNILDI_04460 0.75 -0.1 881,072 - yieK BNILDI_04460 0.75 +0.5 881,093 + yieK BNILDI_04460 0.78 +0.4 881,093 + yieK BNILDI_04460 0.78 -1.6 881,117 - yieK BNILDI_04460 0.81 +0.2 881,122 + yieK BNILDI_04460 0.82 -1.8 881,122 + yieK BNILDI_04460 0.82 -0.1 881,122 + yieK BNILDI_04460 0.82 -0.6 881,122 + yieK BNILDI_04460 0.82 +0.4 881,123 - yieK BNILDI_04460 0.82 +0.8 881,123 - yieK BNILDI_04460 0.82 +0.3 881,183 + +1.1 881,184 - +1.5 881,186 - -0.1 881,269 - +0.5 881,298 + +0.2 881,298 + -0.1 881,450 + +0.7 881,464 + -1.0 881,464 + +0.3 881,465 - -0.2 881,522 - +3.8 881,641 - BNILDI_04465 0.17 -0.1 881,721 + BNILDI_04465 0.25 -0.3 881,722 - BNILDI_04465 0.25 -0.9 881,895 - BNILDI_04465 0.44 -0.1 881,900 + BNILDI_04465 0.44 -0.8 881,933 + BNILDI_04465 0.48 -2.2 881,954 + BNILDI_04465 0.50 -0.1 881,955 - BNILDI_04465 0.50 -0.3 881,955 - BNILDI_04465 0.50 -0.5 881,955 - BNILDI_04465 0.50 -0.6 881,955 - BNILDI_04465 0.50 -0.2 881,991 - BNILDI_04465 0.54 +0.4 881,996 - BNILDI_04465 0.54 -0.2 882,039 - BNILDI_04465 0.59 +0.0 882,106 - BNILDI_04465 0.66 -0.2 882,118 + BNILDI_04465 0.67 -0.2 882,118 + BNILDI_04465 0.67 +0.2 882,165 + BNILDI_04465 0.72 -0.2 882,216 + BNILDI_04465 0.77 -0.6
Or see this region's nucleotide sequence