Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uhpC and uhpB are separated by 9 nucleotides uhpB and uhpA_G97D overlap by 1 nucleotides uhpA_G97D and ilvN are separated by 74 nucleotides ilvN and BNILDI_04200 are separated by 3 nucleotides
BNILDI_04180: uhpC - MFS transporter family glucose-6-phosphate receptor UhpC, at 829,642 to 830,961
uhpC
BNILDI_04185: uhpB - signal transduction histidine-protein kinase/phosphatase UhpB, at 830,971 to 832,473
uhpB
BNILDI_04190: uhpA_G97D - DNA-binding response regulator UhpA, at 832,473 to 833,063
_G97D
BNILDI_04195: ilvN - acetolactate synthase small subunit, at 833,138 to 833,428
ilvN
BNILDI_04200: BNILDI_04200 - Acetolactate synthase, at 833,432 to 835,120
_04200
Position (kb) 830
831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 830.061 kb on + strand, within uhpC at 830.133 kb on + strand, within uhpC at 830.134 kb on - strand, within uhpC at 830.135 kb on + strand, within uhpC at 830.136 kb on - strand, within uhpC at 830.136 kb on - strand, within uhpC at 830.136 kb on - strand, within uhpC at 830.174 kb on + strand, within uhpC at 830.175 kb on - strand, within uhpC at 830.175 kb on - strand, within uhpC at 830.175 kb on - strand, within uhpC at 830.175 kb on - strand, within uhpC at 830.175 kb on - strand, within uhpC at 830.186 kb on + strand, within uhpC at 830.187 kb on - strand, within uhpC at 830.208 kb on + strand, within uhpC at 830.209 kb on - strand, within uhpC at 830.211 kb on - strand, within uhpC at 830.211 kb on - strand, within uhpC at 830.228 kb on + strand, within uhpC at 830.228 kb on + strand, within uhpC at 830.228 kb on + strand, within uhpC at 830.228 kb on + strand, within uhpC at 830.228 kb on + strand, within uhpC at 830.229 kb on - strand, within uhpC at 830.229 kb on - strand, within uhpC at 830.229 kb on - strand, within uhpC at 830.229 kb on - strand, within uhpC at 830.327 kb on - strand, within uhpC at 830.385 kb on + strand, within uhpC at 830.385 kb on + strand, within uhpC at 830.386 kb on - strand, within uhpC at 830.386 kb on - strand, within uhpC at 830.515 kb on - strand, within uhpC at 830.733 kb on + strand, within uhpC at 830.734 kb on - strand, within uhpC at 830.734 kb on - strand, within uhpC at 830.734 kb on - strand, within uhpC at 830.846 kb on + strand at 830.972 kb on + strand at 830.978 kb on + strand at 830.979 kb on - strand at 830.979 kb on - strand at 830.979 kb on - strand at 830.989 kb on + strand at 831.256 kb on + strand, within uhpB at 831.257 kb on - strand, within uhpB at 831.380 kb on - strand, within uhpB at 831.501 kb on + strand, within uhpB at 831.709 kb on + strand, within uhpB at 831.888 kb on + strand, within uhpB at 831.889 kb on - strand, within uhpB at 831.889 kb on - strand, within uhpB at 831.891 kb on + strand, within uhpB at 831.891 kb on + strand, within uhpB at 831.909 kb on - strand, within uhpB at 831.909 kb on - strand, within uhpB at 831.981 kb on + strand, within uhpB at 831.992 kb on + strand, within uhpB at 831.992 kb on + strand, within uhpB at 832.201 kb on + strand, within uhpB at 832.234 kb on + strand, within uhpB at 832.349 kb on - strand at 832.349 kb on - strand at 832.451 kb on - strand at 832.451 kb on - strand at 832.506 kb on + strand at 832.507 kb on - strand at 832.515 kb on - strand at 832.680 kb on - strand, within uhpA_G97D at 832.702 kb on + strand, within uhpA_G97D at 832.703 kb on - strand, within uhpA_G97D at 832.724 kb on + strand, within uhpA_G97D at 832.724 kb on + strand, within uhpA_G97D at 832.724 kb on + strand, within uhpA_G97D at 832.867 kb on - strand, within uhpA_G97D at 832.910 kb on + strand, within uhpA_G97D at 832.911 kb on - strand, within uhpA_G97D at 832.911 kb on - strand, within uhpA_G97D at 832.977 kb on + strand, within uhpA_G97D at 833.043 kb on + strand at 833.044 kb on - strand at 833.045 kb on + strand at 833.170 kb on + strand, within ilvN at 833.170 kb on + strand, within ilvN at 833.231 kb on + strand, within ilvN at 833.275 kb on + strand, within ilvN at 833.276 kb on - strand, within ilvN at 833.276 kb on - strand, within ilvN at 833.433 kb on + strand at 833.434 kb on - strand at 833.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 830,061 + uhpC BNILDI_04180 0.32 +0.4 830,133 + uhpC BNILDI_04180 0.37 +0.2 830,134 - uhpC BNILDI_04180 0.37 -0.2 830,135 + uhpC BNILDI_04180 0.37 -0.5 830,136 - uhpC BNILDI_04180 0.37 -0.1 830,136 - uhpC BNILDI_04180 0.37 -2.3 830,136 - uhpC BNILDI_04180 0.37 -0.1 830,174 + uhpC BNILDI_04180 0.40 +0.9 830,175 - uhpC BNILDI_04180 0.40 -0.3 830,175 - uhpC BNILDI_04180 0.40 -1.5 830,175 - uhpC BNILDI_04180 0.40 +0.1 830,175 - uhpC BNILDI_04180 0.40 -0.6 830,175 - uhpC BNILDI_04180 0.40 +0.1 830,186 + uhpC BNILDI_04180 0.41 -0.4 830,187 - uhpC BNILDI_04180 0.41 -0.7 830,208 + uhpC BNILDI_04180 0.43 -0.4 830,209 - uhpC BNILDI_04180 0.43 +0.1 830,211 - uhpC BNILDI_04180 0.43 -0.7 830,211 - uhpC BNILDI_04180 0.43 +0.0 830,228 + uhpC BNILDI_04180 0.44 +0.1 830,228 + uhpC BNILDI_04180 0.44 -1.7 830,228 + uhpC BNILDI_04180 0.44 -0.2 830,228 + uhpC BNILDI_04180 0.44 +1.5 830,228 + uhpC BNILDI_04180 0.44 +0.1 830,229 - uhpC BNILDI_04180 0.44 -2.3 830,229 - uhpC BNILDI_04180 0.44 -2.1 830,229 - uhpC BNILDI_04180 0.44 +0.2 830,229 - uhpC BNILDI_04180 0.44 -1.3 830,327 - uhpC BNILDI_04180 0.52 +0.1 830,385 + uhpC BNILDI_04180 0.56 -1.0 830,385 + uhpC BNILDI_04180 0.56 -0.6 830,386 - uhpC BNILDI_04180 0.56 +0.4 830,386 - uhpC BNILDI_04180 0.56 -0.2 830,515 - uhpC BNILDI_04180 0.66 +0.2 830,733 + uhpC BNILDI_04180 0.83 -0.0 830,734 - uhpC BNILDI_04180 0.83 +1.2 830,734 - uhpC BNILDI_04180 0.83 +1.5 830,734 - uhpC BNILDI_04180 0.83 -0.1 830,846 + +0.8 830,972 + -1.9 830,978 + -0.5 830,979 - -0.2 830,979 - +0.1 830,979 - -1.3 830,989 + +0.6 831,256 + uhpB BNILDI_04185 0.19 -1.5 831,257 - uhpB BNILDI_04185 0.19 -1.0 831,380 - uhpB BNILDI_04185 0.27 -1.0 831,501 + uhpB BNILDI_04185 0.35 -1.1 831,709 + uhpB BNILDI_04185 0.49 +0.1 831,888 + uhpB BNILDI_04185 0.61 -1.0 831,889 - uhpB BNILDI_04185 0.61 -0.1 831,889 - uhpB BNILDI_04185 0.61 +0.4 831,891 + uhpB BNILDI_04185 0.61 +0.6 831,891 + uhpB BNILDI_04185 0.61 -1.2 831,909 - uhpB BNILDI_04185 0.62 -1.2 831,909 - uhpB BNILDI_04185 0.62 -0.3 831,981 + uhpB BNILDI_04185 0.67 +1.1 831,992 + uhpB BNILDI_04185 0.68 -0.1 831,992 + uhpB BNILDI_04185 0.68 -0.3 832,201 + uhpB BNILDI_04185 0.82 +0.4 832,234 + uhpB BNILDI_04185 0.84 +0.1 832,349 - +0.3 832,349 - -0.9 832,451 - +5.1 832,451 - +0.5 832,506 + -0.8 832,507 - -0.3 832,515 - -0.3 832,680 - uhpA_G97D BNILDI_04190 0.35 +0.3 832,702 + uhpA_G97D BNILDI_04190 0.39 +1.1 832,703 - uhpA_G97D BNILDI_04190 0.39 -0.6 832,724 + uhpA_G97D BNILDI_04190 0.42 +0.5 832,724 + uhpA_G97D BNILDI_04190 0.42 -0.9 832,724 + uhpA_G97D BNILDI_04190 0.42 -0.3 832,867 - uhpA_G97D BNILDI_04190 0.67 -2.3 832,910 + uhpA_G97D BNILDI_04190 0.74 -1.0 832,911 - uhpA_G97D BNILDI_04190 0.74 +0.3 832,911 - uhpA_G97D BNILDI_04190 0.74 -0.3 832,977 + uhpA_G97D BNILDI_04190 0.85 +0.2 833,043 + +0.4 833,044 - -1.2 833,045 + -0.7 833,170 + ilvN BNILDI_04195 0.11 -0.6 833,170 + ilvN BNILDI_04195 0.11 -1.0 833,231 + ilvN BNILDI_04195 0.32 -0.3 833,275 + ilvN BNILDI_04195 0.47 -0.3 833,276 - ilvN BNILDI_04195 0.47 +0.1 833,276 - ilvN BNILDI_04195 0.47 -0.3 833,433 + -2.2 833,434 - -2.4 833,452 + +0.7
Or see this region's nucleotide sequence