Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yicC and dinD are separated by 220 nucleotides dinD and yicG are separated by 291 nucleotides yicG and ligB overlap by 4 nucleotides
BNILDI_04050: yicC - UPF0701 protein YicC, at 798,329 to 799,192
yicC
BNILDI_04055: dinD - DNA damage-inducible protein D, at 799,413 to 800,237
dinD
BNILDI_04060: yicG - UPF0126 inner membrane protein YicG, at 800,529 to 801,146
yicG
BNILDI_04065: ligB - NAD-dependent DNA ligase LigB, at 801,143 to 802,825
ligB
Position (kb) 799
800
801 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 798.431 kb on + strand, within yicC at 798.432 kb on - strand, within yicC at 798.485 kb on - strand, within yicC at 798.594 kb on + strand, within yicC at 798.653 kb on - strand, within yicC at 798.736 kb on + strand, within yicC at 798.751 kb on + strand, within yicC at 798.752 kb on - strand, within yicC at 799.013 kb on + strand, within yicC at 799.013 kb on + strand, within yicC at 799.014 kb on - strand, within yicC at 799.109 kb on - strand at 799.191 kb on - strand at 799.356 kb on - strand at 799.378 kb on - strand at 799.444 kb on + strand at 799.618 kb on + strand, within dinD at 799.619 kb on - strand, within dinD at 799.622 kb on - strand, within dinD at 799.669 kb on - strand, within dinD at 799.685 kb on - strand, within dinD at 799.687 kb on + strand, within dinD at 799.687 kb on + strand, within dinD at 799.734 kb on + strand, within dinD at 799.735 kb on - strand, within dinD at 799.932 kb on + strand, within dinD at 800.096 kb on + strand, within dinD at 800.096 kb on + strand, within dinD at 800.097 kb on - strand, within dinD at 800.097 kb on - strand, within dinD at 800.097 kb on - strand, within dinD at 800.099 kb on + strand, within dinD at 800.100 kb on - strand, within dinD at 800.215 kb on + strand at 800.235 kb on + strand at 800.366 kb on - strand at 800.403 kb on + strand at 800.403 kb on + strand at 800.403 kb on + strand at 800.403 kb on + strand at 800.403 kb on + strand at 800.403 kb on + strand at 800.403 kb on + strand at 800.403 kb on + strand at 800.404 kb on - strand at 800.404 kb on - strand at 800.404 kb on - strand at 800.404 kb on - strand at 800.404 kb on - strand at 800.404 kb on - strand at 800.404 kb on - strand at 800.404 kb on - strand at 800.404 kb on - strand at 800.404 kb on - strand at 800.435 kb on - strand at 800.536 kb on + strand at 800.547 kb on + strand at 800.548 kb on - strand at 800.628 kb on - strand, within yicG at 800.628 kb on - strand, within yicG at 800.689 kb on - strand, within yicG at 800.719 kb on - strand, within yicG at 800.877 kb on - strand, within yicG at 800.877 kb on - strand, within yicG at 800.930 kb on + strand, within yicG at 800.931 kb on - strand, within yicG at 800.940 kb on - strand, within yicG at 800.973 kb on + strand, within yicG at 800.974 kb on - strand, within yicG at 800.974 kb on - strand, within yicG at 801.006 kb on + strand, within yicG at 801.007 kb on - strand, within yicG at 801.007 kb on - strand, within yicG at 801.024 kb on + strand, within yicG at 801.025 kb on - strand, within yicG at 801.025 kb on - strand, within yicG at 801.050 kb on + strand, within yicG at 801.127 kb on - strand at 801.145 kb on - strand at 801.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 798,431 + yicC BNILDI_04050 0.12 +1.1 798,432 - yicC BNILDI_04050 0.12 -0.1 798,485 - yicC BNILDI_04050 0.18 -0.6 798,594 + yicC BNILDI_04050 0.31 +1.1 798,653 - yicC BNILDI_04050 0.38 +0.3 798,736 + yicC BNILDI_04050 0.47 +0.7 798,751 + yicC BNILDI_04050 0.49 +0.2 798,752 - yicC BNILDI_04050 0.49 +0.1 799,013 + yicC BNILDI_04050 0.79 +0.5 799,013 + yicC BNILDI_04050 0.79 +0.5 799,014 - yicC BNILDI_04050 0.79 +0.9 799,109 - -0.5 799,191 - +1.6 799,356 - -0.5 799,378 - -1.1 799,444 + +0.3 799,618 + dinD BNILDI_04055 0.25 -0.5 799,619 - dinD BNILDI_04055 0.25 +0.6 799,622 - dinD BNILDI_04055 0.25 -0.5 799,669 - dinD BNILDI_04055 0.31 -2.4 799,685 - dinD BNILDI_04055 0.33 +0.4 799,687 + dinD BNILDI_04055 0.33 +1.1 799,687 + dinD BNILDI_04055 0.33 -0.5 799,734 + dinD BNILDI_04055 0.39 +0.4 799,735 - dinD BNILDI_04055 0.39 -1.8 799,932 + dinD BNILDI_04055 0.63 +1.3 800,096 + dinD BNILDI_04055 0.83 +2.1 800,096 + dinD BNILDI_04055 0.83 +0.1 800,097 - dinD BNILDI_04055 0.83 -0.1 800,097 - dinD BNILDI_04055 0.83 -0.8 800,097 - dinD BNILDI_04055 0.83 +0.2 800,099 + dinD BNILDI_04055 0.83 -0.1 800,100 - dinD BNILDI_04055 0.83 -0.8 800,215 + -0.1 800,235 + -0.4 800,366 - +0.7 800,403 + -0.4 800,403 + -0.0 800,403 + +1.1 800,403 + -3.1 800,403 + -0.2 800,403 + -2.7 800,403 + -0.6 800,403 + -0.3 800,404 - +0.7 800,404 - -0.6 800,404 - +0.0 800,404 - +0.3 800,404 - -2.1 800,404 - -0.2 800,404 - -0.9 800,404 - -0.3 800,404 - -1.6 800,404 - -0.3 800,435 - -2.0 800,536 + -0.3 800,547 + +0.3 800,548 - +0.2 800,628 - yicG BNILDI_04060 0.16 -0.7 800,628 - yicG BNILDI_04060 0.16 +0.3 800,689 - yicG BNILDI_04060 0.26 +0.2 800,719 - yicG BNILDI_04060 0.31 -0.1 800,877 - yicG BNILDI_04060 0.56 -0.1 800,877 - yicG BNILDI_04060 0.56 -0.2 800,930 + yicG BNILDI_04060 0.65 -0.2 800,931 - yicG BNILDI_04060 0.65 -1.9 800,940 - yicG BNILDI_04060 0.67 +0.1 800,973 + yicG BNILDI_04060 0.72 -0.7 800,974 - yicG BNILDI_04060 0.72 +0.6 800,974 - yicG BNILDI_04060 0.72 +0.2 801,006 + yicG BNILDI_04060 0.77 +0.9 801,007 - yicG BNILDI_04060 0.77 +0.2 801,007 - yicG BNILDI_04060 0.77 +0.2 801,024 + yicG BNILDI_04060 0.80 +0.6 801,025 - yicG BNILDI_04060 0.80 +1.1 801,025 - yicG BNILDI_04060 0.80 -1.8 801,050 + yicG BNILDI_04060 0.84 -0.5 801,127 - -0.3 801,145 - +0.4 801,145 - -0.6
Or see this region's nucleotide sequence