Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_03950 and rfaJ are separated by 84 nucleotides rfaJ and rfaY are separated by 25 nucleotides rfaY and rfaJ are separated by 9 nucleotides
BNILDI_03950: BNILDI_03950 - beta1,3-glucosyltransferase, at 781,945 to 782,928
_03950
BNILDI_03955: rfaJ - UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase, at 783,013 to 784,038
rfaJ
BNILDI_03960: rfaY - lipopolysaccharide core heptose(II) kinase RfaY, at 784,064 to 784,756
rfaY
BNILDI_03965: rfaJ - lipopolysaccharide 1,2-glucosyltransferase, at 784,766 to 785,761
rfaJ
Position (kb) 783
784
785 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 782.207 kb on - strand, within BNILDI_03950 at 782.319 kb on + strand, within BNILDI_03950 at 782.363 kb on + strand, within BNILDI_03950 at 782.442 kb on + strand, within BNILDI_03950 at 782.508 kb on + strand, within BNILDI_03950 at 782.574 kb on - strand, within BNILDI_03950 at 782.629 kb on - strand, within BNILDI_03950 at 782.664 kb on + strand, within BNILDI_03950 at 782.664 kb on + strand, within BNILDI_03950 at 782.665 kb on - strand, within BNILDI_03950 at 783.245 kb on + strand, within rfaJ at 783.379 kb on - strand, within rfaJ at 783.405 kb on + strand, within rfaJ at 783.405 kb on + strand, within rfaJ at 783.405 kb on + strand, within rfaJ at 783.406 kb on - strand, within rfaJ at 783.493 kb on + strand, within rfaJ at 783.497 kb on - strand, within rfaJ at 783.532 kb on + strand, within rfaJ at 783.666 kb on - strand, within rfaJ at 783.919 kb on + strand, within rfaJ at 784.387 kb on - strand, within rfaY at 784.412 kb on - strand, within rfaY at 784.516 kb on - strand, within rfaY at 784.756 kb on + strand at 784.809 kb on - strand at 784.840 kb on - strand at 784.963 kb on + strand, within rfaJ at 785.030 kb on - strand, within rfaJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 782,207 - BNILDI_03950 0.27 -1.9 782,319 + BNILDI_03950 0.38 -4.6 782,363 + BNILDI_03950 0.42 -2.1 782,442 + BNILDI_03950 0.51 -2.1 782,508 + BNILDI_03950 0.57 -1.8 782,574 - BNILDI_03950 0.64 -1.6 782,629 - BNILDI_03950 0.70 -3.7 782,664 + BNILDI_03950 0.73 -2.4 782,664 + BNILDI_03950 0.73 -2.7 782,665 - BNILDI_03950 0.73 -2.5 783,245 + rfaJ BNILDI_03955 0.23 -0.8 783,379 - rfaJ BNILDI_03955 0.36 +0.7 783,405 + rfaJ BNILDI_03955 0.38 -3.4 783,405 + rfaJ BNILDI_03955 0.38 -3.3 783,405 + rfaJ BNILDI_03955 0.38 -3.3 783,406 - rfaJ BNILDI_03955 0.38 -0.6 783,493 + rfaJ BNILDI_03955 0.47 -3.6 783,497 - rfaJ BNILDI_03955 0.47 -0.1 783,532 + rfaJ BNILDI_03955 0.51 -0.7 783,666 - rfaJ BNILDI_03955 0.64 -0.8 783,919 + rfaJ BNILDI_03955 0.88 -1.1 784,387 - rfaY BNILDI_03960 0.47 -0.2 784,412 - rfaY BNILDI_03960 0.50 -0.9 784,516 - rfaY BNILDI_03960 0.65 -0.4 784,756 + -3.2 784,809 - -2.7 784,840 - -3.0 784,963 + rfaJ BNILDI_03965 0.20 -0.3 785,030 - rfaJ BNILDI_03965 0.27 -4.8
Or see this region's nucleotide sequence