Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_03945 and BNILDI_03950 are separated by 45 nucleotides BNILDI_03950 and rfaJ are separated by 84 nucleotides
BNILDI_03945: BNILDI_03945 - O-antigen ligase domain-containing protein, at 780,646 to 781,899
_03945
BNILDI_03950: BNILDI_03950 - beta1,3-glucosyltransferase, at 781,945 to 782,928
_03950
BNILDI_03955: rfaJ - UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase, at 783,013 to 784,038
rfaJ
Position (kb) 781
782
783 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 781.156 kb on + strand, within BNILDI_03945 at 781.318 kb on - strand, within BNILDI_03945 at 781.321 kb on + strand, within BNILDI_03945 at 781.339 kb on + strand, within BNILDI_03945 at 781.445 kb on - strand, within BNILDI_03945 at 781.449 kb on - strand, within BNILDI_03945 at 782.207 kb on - strand, within BNILDI_03950 at 782.319 kb on + strand, within BNILDI_03950 at 782.363 kb on + strand, within BNILDI_03950 at 782.442 kb on + strand, within BNILDI_03950 at 782.508 kb on + strand, within BNILDI_03950 at 782.574 kb on - strand, within BNILDI_03950 at 782.629 kb on - strand, within BNILDI_03950 at 782.664 kb on + strand, within BNILDI_03950 at 782.664 kb on + strand, within BNILDI_03950 at 782.665 kb on - strand, within BNILDI_03950 at 783.245 kb on + strand, within rfaJ at 783.379 kb on - strand, within rfaJ at 783.405 kb on + strand, within rfaJ at 783.405 kb on + strand, within rfaJ at 783.405 kb on + strand, within rfaJ at 783.406 kb on - strand, within rfaJ at 783.493 kb on + strand, within rfaJ at 783.497 kb on - strand, within rfaJ at 783.532 kb on + strand, within rfaJ at 783.666 kb on - strand, within rfaJ at 783.919 kb on + strand, within rfaJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 781,156 + BNILDI_03945 0.41 -3.7 781,318 - BNILDI_03945 0.54 -3.2 781,321 + BNILDI_03945 0.54 -4.2 781,339 + BNILDI_03945 0.55 -4.2 781,445 - BNILDI_03945 0.64 -1.1 781,449 - BNILDI_03945 0.64 -2.8 782,207 - BNILDI_03950 0.27 -1.9 782,319 + BNILDI_03950 0.38 -4.6 782,363 + BNILDI_03950 0.42 -2.1 782,442 + BNILDI_03950 0.51 -2.1 782,508 + BNILDI_03950 0.57 -1.8 782,574 - BNILDI_03950 0.64 -1.6 782,629 - BNILDI_03950 0.70 -3.7 782,664 + BNILDI_03950 0.73 -2.4 782,664 + BNILDI_03950 0.73 -2.7 782,665 - BNILDI_03950 0.73 -2.5 783,245 + rfaJ BNILDI_03955 0.23 -0.8 783,379 - rfaJ BNILDI_03955 0.36 +0.7 783,405 + rfaJ BNILDI_03955 0.38 -3.4 783,405 + rfaJ BNILDI_03955 0.38 -3.3 783,405 + rfaJ BNILDI_03955 0.38 -3.3 783,406 - rfaJ BNILDI_03955 0.38 -0.6 783,493 + rfaJ BNILDI_03955 0.47 -3.6 783,497 - rfaJ BNILDI_03955 0.47 -0.1 783,532 + rfaJ BNILDI_03955 0.51 -0.7 783,666 - rfaJ BNILDI_03955 0.64 -0.8 783,919 + rfaJ BNILDI_03955 0.88 -1.1
Or see this region's nucleotide sequence