Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfaC and BNILDI_03945 are separated by 69 nucleotides BNILDI_03945 and BNILDI_03950 are separated by 45 nucleotides
BNILDI_03940: rfaC - lipopolysaccharide heptosyltransferase RfaC, at 779,605 to 780,576
rfaC
BNILDI_03945: BNILDI_03945 - O-antigen ligase domain-containing protein, at 780,646 to 781,899
_03945
BNILDI_03950: BNILDI_03950 - beta1,3-glucosyltransferase, at 781,945 to 782,928
_03950
Position (kb) 780
781
782 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 780.589 kb on + strand at 780.764 kb on - strand at 780.766 kb on + strand at 780.825 kb on - strand, within BNILDI_03945 at 780.891 kb on + strand, within BNILDI_03945 at 780.895 kb on + strand, within BNILDI_03945 at 780.923 kb on - strand, within BNILDI_03945 at 781.156 kb on + strand, within BNILDI_03945 at 781.318 kb on - strand, within BNILDI_03945 at 781.321 kb on + strand, within BNILDI_03945 at 781.339 kb on + strand, within BNILDI_03945 at 781.445 kb on - strand, within BNILDI_03945 at 781.449 kb on - strand, within BNILDI_03945 at 782.207 kb on - strand, within BNILDI_03950 at 782.319 kb on + strand, within BNILDI_03950 at 782.363 kb on + strand, within BNILDI_03950 at 782.442 kb on + strand, within BNILDI_03950 at 782.508 kb on + strand, within BNILDI_03950 at 782.574 kb on - strand, within BNILDI_03950 at 782.629 kb on - strand, within BNILDI_03950 at 782.664 kb on + strand, within BNILDI_03950 at 782.664 kb on + strand, within BNILDI_03950 at 782.665 kb on - strand, within BNILDI_03950
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 780,589 + +0.8 780,764 - +0.1 780,766 + -1.8 780,825 - BNILDI_03945 0.14 -3.8 780,891 + BNILDI_03945 0.20 -3.2 780,895 + BNILDI_03945 0.20 -1.3 780,923 - BNILDI_03945 0.22 -0.9 781,156 + BNILDI_03945 0.41 -3.7 781,318 - BNILDI_03945 0.54 -3.2 781,321 + BNILDI_03945 0.54 -4.2 781,339 + BNILDI_03945 0.55 -4.2 781,445 - BNILDI_03945 0.64 -1.1 781,449 - BNILDI_03945 0.64 -2.8 782,207 - BNILDI_03950 0.27 -1.9 782,319 + BNILDI_03950 0.38 -4.6 782,363 + BNILDI_03950 0.42 -2.1 782,442 + BNILDI_03950 0.51 -2.1 782,508 + BNILDI_03950 0.57 -1.8 782,574 - BNILDI_03950 0.64 -1.6 782,629 - BNILDI_03950 0.70 -3.7 782,664 + BNILDI_03950 0.73 -2.4 782,664 + BNILDI_03950 0.73 -2.7 782,665 - BNILDI_03950 0.73 -2.5
Or see this region's nucleotide sequence